Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0274
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171...    32   0.36 
03_01_0255 - 1988693-1988772,1988844-1989060                           32   0.36 
02_02_0487 - 10860693-10861931                                         28   5.9  
02_02_0243 - 8226955-8227304,8227355-8228201,8228460-8229467           28   5.9  

>05_03_0682 -
           16916437-16916686,16916761-16916822,16917082-16917147,
           16917606-16917737,16917925-16918026,16918146-16918343,
           16918409-16918555,16918804-16918914,16919661-16920194,
           16920269-16920425,16920511-16920660,16920744-16920883,
           16921668-16921784,16922759-16922932,16923020-16923187,
           16923323-16923464,16923610-16923728,16924997-16925098,
           16925618-16925701,16926843-16927142
          Length = 1084

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
 Frame = -3

Query: 571 VRHFYKV*NAQYRNPKNWFDWQSQGDCLEKV-EVGQ--PYMPSH*Q---SVGHKSSG 419
           +RHF      +Y   KNW++ Q +GD +  V ++GQ  P    H Q   SVG  S+G
Sbjct: 684 IRHFDSSKEEKYHMDKNWWEMQERGDQVASVLDIGQVGPRATCHCQVIRSVGQWSAG 740


>03_01_0255 - 1988693-1988772,1988844-1989060
          Length = 98

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 405 CEVSTPELLCPTDCQCD 455
           C+VS   +LCP DC+CD
Sbjct: 77  CDVSCDSVLCPNDCECD 93


>02_02_0487 - 10860693-10861931
          Length = 412

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = +2

Query: 266 ANAECRSLRIHPILFRSLAFRIQSLPTIWIRSSIYLVGWLPTLQRP--VRGFHSRTFVPH 439
           A A   S+  +  L R +  R+  LPT  +R+++    WL     P  +R F +R   P 
Sbjct: 13  AAAAISSVLANDDLLREILLRL-GLPTTLVRAALVSTRWLRLASDPAFLRRFRARH--PP 69

Query: 440 RLSVRWHIGLAHFHFFQAITLALPVKPVL 526
           RL   +H   A F       + LP  P L
Sbjct: 70  RLLGFYHTARARFQDEVPAFVPLPQPPEL 98


>02_02_0243 - 8226955-8227304,8227355-8228201,8228460-8229467
          Length = 734

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 318 RDLKRMGWIRRDLHSALARHVLNNRLSAWRI 226
           R+  R GW+  DL SA A    N+R   W +
Sbjct: 356 REDLRSGWVEDDLRSAAAYRRFNDRRGQWTL 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,095,808
Number of Sequences: 37544
Number of extensions: 421270
Number of successful extensions: 849
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)