Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0274
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40344| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_19994| Best HMM Match : Pox_J1 (HMM E-Value=7.6)                    29   2.6  
SB_7946| Best HMM Match : DUF434 (HMM E-Value=7.5)                     29   3.4  
SB_33996| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-09)                 29   4.5  
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     29   4.5  
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_32264| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32)                 29   4.5  
SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6)             28   6.0  
SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_40344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 612 TVRFQRSFLLRTIRLWNKLP 671
           T  F+ SF  RTI+ WNKLP
Sbjct: 365 TEAFKNSFFCRTIKEWNKLP 384


>SB_19994| Best HMM Match : Pox_J1 (HMM E-Value=7.6)
          Length = 348

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/53 (33%), Positives = 31/53 (58%)
 Frame = +2

Query: 425 TFVPHRLSVRWHIGLAHFHFFQAITLALPVKPVLRISVLSILYLIEMPNIARS 583
           TF P + S +W + ++   FFQ + ++ P+K  L  S+ ++  LI+ PN A S
Sbjct: 121 TFGPEK-SAQWLLSMS-ISFFQDVLVSQPIKVFLLASIFAL--LIKDPNKAES 169


>SB_7946| Best HMM Match : DUF434 (HMM E-Value=7.5)
          Length = 294

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 609 STVRFQRSFLLRTIRLWNKLP 671
           +T  ++ SF  RTI+ WNKLP
Sbjct: 255 TTEAYKNSFFCRTIKEWNKLP 275


>SB_33996| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-09)
          Length = 537

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +2

Query: 410 GFHSRTFVPHRLS-VRWHIGLAHFHFFQAITLALPVKPVLRISVLSILYLIEMPNIARSI 586
           GFH R  +   ++   W + LA+F    A  L+L    + R   ++ +Y  ++      I
Sbjct: 225 GFHIRQSLSFPVAGTVWVLHLAYFIACTASLLSLSALTIDRYLSVTSMYKRDVRACKVFI 284

Query: 587 LSGTAAFIDSAFPEVFFA 640
           LS    F+  +FP ++FA
Sbjct: 285 LSAGIWFVSVSFPMLYFA 302


>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 600  LRSSTVRFQRSFLLRTIRLWNKLP 671
            L+++ + F  SF  RTIR WN LP
Sbjct: 1637 LQANILAFNYSFFPRTIRTWNLLP 1660


>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3142

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 600  LRSSTVRFQRSFLLRTIRLWNKLP 671
            L+++ + F  SF  RTIR WN LP
Sbjct: 1083 LQANILAFNYSFFPRTIRTWNLLP 1106


>SB_32264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 379 ADEVDR*SDPNSW*RLDAKSKRPKENGMDSERPTL 275
           A EVD+   PN + R DA+ +RP   G D E  +L
Sbjct: 172 APEVDKAKHPNGF-RKDARRERPHVRGEDGEEESL 205


>SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32)
          Length = 698

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 612 TVRFQRSFLLRTIRLWNKLP 671
           T  ++ SF  RTI+ WNKLP
Sbjct: 662 TEAYKNSFFCRTIKEWNKLP 681


>SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6)
          Length = 231

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 600 LRSSTVRFQRSFLLRTIRLWNKLP 671
           L + T  ++ SFL R +RLWN LP
Sbjct: 191 LNARTDIYKYSFLPRALRLWNNLP 214


>SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 866

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 334 VFTNYLDQIIDLPRRLAAHVTTSSARFPLQNFCAPPIVSAMAYRAGPLPLFPSNHL 501
           + T  LD+I+D  RRLA+ VT   +  P     +    S     + PL LF ++ L
Sbjct: 175 LLTQLLDRILDKHRRLASTVTPPPS--PTHGVASTHSASPTVPNSSPLSLFSTSPL 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,944,374
Number of Sequences: 59808
Number of extensions: 490021
Number of successful extensions: 1139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)