Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0274
         (672 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY028783-1|AAK32957.1|  499|Anopheles gambiae cytochrome P450 pr...    25   2.9  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   3.8  
AF487534-1|AAL93295.1|  509|Anopheles gambiae cytochrome P450 CY...    24   5.0  

>AY028783-1|AAK32957.1|  499|Anopheles gambiae cytochrome P450
           protein.
          Length = 499

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 306 RMGWIRRDLHSALARHVLNNRLSAWRILMY 217
           R G+I R  H  L+ H+LN+    W +L +
Sbjct: 100 RGGYINRQ-HDPLSGHMLNSGSERWSVLRH 128


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 494 LLGKSGSGPALYAIALTIG 438
           L+GK+GSG +    A+TIG
Sbjct: 112 LVGKNGSGKSAILAAMTIG 130


>AF487534-1|AAL93295.1|  509|Anopheles gambiae cytochrome P450
           CYP6P3 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -3

Query: 247 QTISVEDFNVFH 212
           +TI V+DFNVFH
Sbjct: 94  KTILVKDFNVFH 105


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 743,262
Number of Sequences: 2352
Number of extensions: 16422
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67322955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)