Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0274
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    33   0.14 
AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    33   0.18 
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    32   0.32 
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    32   0.32 
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    32   0.32 
Z81493-10|CAB04044.2|  508|Caenorhabditis elegans Hypothetical p...    29   3.0  
AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine re...    29   4.0  
U23484-6|AAK93845.1|  641|Caenorhabditis elegans Pink (pten-indu...    28   5.3  
Z93379-4|CAB07588.1|  306|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
 Frame = -1

Query: 588 NMERAMLGISI---RYRMLNTE-IRRTGLTGXXXXXXXXXXXXASP-ICHRTDNRWGTKV 424
           ++ER ++GI++   R R L+ E IR+  L               +  +  R D RW T +
Sbjct: 297 SLERRLVGITLTQQRERDLHREDIRKMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLM 356

Query: 423 LEWKPRTGRCNVGSQPTR*IDDL 355
            EW+P   +  VG  P R  D L
Sbjct: 357 TEWRPYGWKRPVGRPPMRWTDSL 379


>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 462 ICHRTDNRWGTKVLEWKPRTGRCNVGSQPTR*IDDL 355
           +  RTD RW T + +W PR  +  VG  P R  D L
Sbjct: 129 VARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSL 164


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 462 ICHRTDNRWGTKVLEWKPRTGRCNVGSQPTR*IDDL 355
           +  R D RW T + EW+P   +  VG  P R  D L
Sbjct: 818 VARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSL 853


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 462  ICHRTDNRWGTKVLEWKPRTGRCNVGSQPTR*IDDL 355
            +  R D RW T + EW+P   +  VG  P R  D L
Sbjct: 993  VARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSL 1028


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 462 ICHRTDNRWGTKVLEWKPRTGRCNVGSQPTR*IDDL 355
           +  R D RW T + EW+P   +  VG  P R  D L
Sbjct: 732 VARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSL 767


>Z81493-10|CAB04044.2|  508|Caenorhabditis elegans Hypothetical
           protein F01D5.9 protein.
          Length = 508

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 314 SLAFRIQSLPTIWIRSSIYLVGWLPTLQR 400
           SLAF+ Q +P +WI+    L+G+    QR
Sbjct: 221 SLAFKYQRMPWLWIKPIRQLIGYEADFQR 249


>AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine
           receptor, class x protein6 protein.
          Length = 293

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = +2

Query: 449 VRWHIGLAHFHF-FQAITLALPV-KPVLRISVL---SILYLIEMPNIARSILSGTAAFID 613
           + WHIGLA F   F +I L L +  PV R +     S +YLI   NI   +L    A   
Sbjct: 3   LNWHIGLACFCLSFVSICLNLLIFIPVFRFAFFGKKSSIYLIAFFNIISDLLQLFVACFH 62

Query: 614 SAFPEVF 634
           S+   +F
Sbjct: 63  SSLSIIF 69


>U23484-6|AAK93845.1|  641|Caenorhabditis elegans Pink (pten-induced
           kinase) homologprotein 1 protein.
          Length = 641

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 331 PVFTNYLDQIIDLPRRLAAHVTTSSARFPLQN 426
           P+F  +L +I      L  HV    A FP QN
Sbjct: 25  PIFQRFLPRIFPATYNLGVHVVLKKAPFPRQN 56


>Z93379-4|CAB07588.1|  306|Caenorhabditis elegans Hypothetical
           protein F21H7.5 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 363 RSTSSAGCPRYNVQCEVSTPELLCPTDCQCD 455
           RS+ S  C + + +C+++  + LCPT  Q D
Sbjct: 126 RSSKSKKCDKSSKKCDLNKAKNLCPTVNQAD 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,287,459
Number of Sequences: 27780
Number of extensions: 360639
Number of successful extensions: 786
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)