Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0274
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil...    29   2.8  
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea...    29   2.8  
At1g20890.1 68414.m02616 expressed protein Location of ESTs OAO2...    28   4.9  
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ...    28   6.5  

>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
            protein / CHD family protein similar to chromatin
            remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
            GI:6478518; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
            (CHRromatin Organization MOdifier)
          Length = 2228

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/18 (72%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
 Frame = +1

Query: 466  AGPLPLF-PSNHLGFASQ 516
            A PLPLF PS+HLGF S+
Sbjct: 1821 ASPLPLFEPSDHLGFRSE 1838


>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to Will die slowly protein
           (SP:Q9V3J8)[Drosophila melanogaster]
          Length = 511

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +1

Query: 316 SCFSHPVFTNYLDQIIDLPRRLAAHVTTSSARFPLQNFCAPPIVSAMAYRAGPLPLFPSN 495
           S  +H +FT+   +II         V  S     LQ F  PP +         + LFP N
Sbjct: 348 SYVNHAIFTSDGSRIITASSDCTVKVWDSKTTDCLQTFKPPPPLRGTDASVNSIHLFPKN 407

Query: 496 --HLGFASQTSS 525
             H+   ++TSS
Sbjct: 408 TEHIVVCNKTSS 419


>At1g20890.1 68414.m02616 expressed protein Location of ESTs OAO242
           5' end, gb|Z30466 and OAO242 3' end, gb|Z30467
          Length = 197

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 664 LFHSRMVRSKKDLWKRTVDERSGSR*Y 584
           LF  + + + K+LWK T+  +SGSR Y
Sbjct: 30  LFGGKTLYAGKELWKETLPLKSGSRVY 56


>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +2

Query: 278 CRSLRIHPILFRSLAFRIQSLPTIWIRSSIYLVGWLPTLQRPVRGFHSRTFVPHRLSVRW 457
           C +L +  +L + +         +  RS+IY++    T+ RP    H     PH++   W
Sbjct: 585 CTTLHVDCLLGKEMYMLNPGHTVMAYRSNIYILP-NNTMTRPFCQLHKEDRCPHKVIFNW 643

Query: 458 H 460
           H
Sbjct: 644 H 644


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,455,685
Number of Sequences: 28952
Number of extensions: 337895
Number of successful extensions: 694
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)