Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0273
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   2.3  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   4.0  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    26   5.2  

>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 49  MVALALTSSPLSFHHHSISFDKFLRKYTTLHIKL 150
           M+A   T+ P   HH+ +  D ++R    L++K+
Sbjct: 277 MIAGGATAKPFVTHHNDLDMDLYMRIAPELYLKM 310


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +1

Query: 58  LALTSSPLSFHHHSISFDKFLRKYTTLHIKLCSRY 162
           +A +SS +S   HS    + +++    H+++C +Y
Sbjct: 348 MAFSSSSISAIEHSAKIIQAIKEENVTHLRICEQY 382


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 28  VSFSSRLMVALALTSSPLSFHHHSISFDKF---LRKYTTLHIKLCSR 159
           V F+   ++A ALTSSP  + ++  SF  +   L     LH K  SR
Sbjct: 135 VLFAIVCLLAAALTSSPYKWAYYGFSFVGYFIALAHSVVLHKKYASR 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,589
Number of Sequences: 5004
Number of extensions: 40634
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)