Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0273
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0189 + 19075411-19075497,19075603-19075682,19076707-190768...    28   7.1  
11_01_0152 + 1270752-1270947,1271113-1271438,1271571-1272128           27   9.4  
02_05_0066 - 25546545-25546999,25547104-25547199,25547294-25547441     27   9.4  

>01_05_0189 +
           19075411-19075497,19075603-19075682,19076707-19076851,
           19077259-19078116,19078664-19078724,19082571-19082680
          Length = 446

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 352 NNARPTSQTPSTNNYNNVNIIGT 284
           +N RPT + P+ N   NVN +GT
Sbjct: 185 SNGRPTVEDPTANTDCNVNFMGT 207


>11_01_0152 + 1270752-1270947,1271113-1271438,1271571-1272128
          Length = 359

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 358 KINNARPTSQTPSTNNYNNVNIIGTTIIMLF 266
           +I N +PTS   S+NN NN  ++G    ++F
Sbjct: 108 EIFNLQPTSYGGSSNNKNNKQLVGMKKTLVF 138


>02_05_0066 - 25546545-25546999,25547104-25547199,25547294-25547441
          Length = 232

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -3

Query: 232 IYRASFSVNGN*KELLLDNQCYINIGCKVLYAMLYIS 122
           ++R  FSV+ N ++LL  +QCY++     +  ML++S
Sbjct: 111 VFRQWFSVDKN-EKLLRASQCYLSTTAGPIAGMLFVS 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,305,060
Number of Sequences: 37544
Number of extensions: 217705
Number of successful extensions: 358
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)