Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0273
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024799-9|AAK72312.1|  293|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z81586-3|CAB04691.1|  203|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U58732-6|AAB00596.3|  333|Caenorhabditis elegans Serpentine rece...    28   6.4  
U58732-5|AAW88398.1|  337|Caenorhabditis elegans Serpentine rece...    28   6.4  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   6.4  

>AC024799-9|AAK72312.1|  293|Caenorhabditis elegans Hypothetical
           protein Y49C4A.1 protein.
          Length = 293

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -3

Query: 193 ELLLDNQCYINIGCKVLYAMLYISLKICQMILN 95
           EL++ + C+I I C VL  +L  +L  C+++LN
Sbjct: 2   ELIIISGCFIGIICSVLTVLLNANL-FCRIVLN 33


>Z81586-3|CAB04691.1|  203|Caenorhabditis elegans Hypothetical
           protein T05F1.4 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 421 LQPESATTNLKKKKQHPL*RIKINNARPTSQTPSTNNYNNV 299
           L P+  + + + + +H     +  N RP S+TPS +N+N V
Sbjct: 42  LSPDRRSNHSEDRHEHRFNNYRQQN-RPNSRTPSPSNHNQV 81


>U58732-6|AAB00596.3|  333|Caenorhabditis elegans Serpentine
           receptor, class v protein5, isoform a protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 300 TLL*LFVDGVCDVGRALFILMRQSGCCFFFFK 395
           T L  +VDG+C +G  +F ++  +  CF   K
Sbjct: 172 TALVAYVDGICCLGTCVFCMICYTATCFLIRK 203


>U58732-5|AAW88398.1|  337|Caenorhabditis elegans Serpentine
           receptor, class v protein5, isoform b protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 300 TLL*LFVDGVCDVGRALFILMRQSGCCFFFFK 395
           T L  +VDG+C +G  +F ++  +  CF   K
Sbjct: 176 TALVAYVDGICCLGTCVFCMICYTATCFLIRK 207


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 408 DSGWSDYVGIKPRTGVSMTFYTSNVSMICEAADPLKWLKS 527
           +SG+SD   + P+T  S+   T+N +++  A D +  LK+
Sbjct: 64  NSGYSDLKDLIPQTTTSLGCKTTNAAILFRACDFMSQLKT 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,459,481
Number of Sequences: 27780
Number of extensions: 224824
Number of successful extensions: 398
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)