Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0272
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   1.8  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   5.5  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   5.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   9.6  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   9.6  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 87  THITWCLTSLMYHWLLACF*NIS 19
           T++T+  T+  Y+WL  C  N+S
Sbjct: 44  TNLTYNNTNRKYYWLNVCCLNLS 66


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 244 CK*CTVSYVTVASEASLLCFL 182
           CK     Y+   + ASL+C L
Sbjct: 173 CKPLKAGYICTKTRASLICLL 193


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 244 CK*CTVSYVTVASEASLLCFL 182
           CK     Y+   + ASL+C L
Sbjct: 173 CKPLKAGYICTKTRASLICLL 193


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 4/7 (57%), Positives = 7/7 (100%)
 Frame = +3

Query: 6   IWPSWIY 26
           +WP+W+Y
Sbjct: 189 LWPAWVY 195


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 386 YNQLYFQFSPGRSVYH 339
           YN  Y+Q+    ++YH
Sbjct: 38  YNPYYYQYLQNAALYH 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,041
Number of Sequences: 336
Number of extensions: 3834
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)