Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0272
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.10 |rpc17||DNA-directed RNA polymerase III complex subu... 51 2e-07
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 29 0.84
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 28 1.1
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 28 1.5
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 27 2.6
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 27 3.4
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 27 3.4
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 4.5
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 5.9
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 7.9
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 7.9
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 7.9
>SPAPB1E7.10 |rpc17||DNA-directed RNA polymerase III complex subunit
Rpc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 129
Score = 50.8 bits (116), Expect = 2e-07
Identities = 30/125 (24%), Positives = 66/125 (52%), Gaps = 9/125 (7%)
Frame = +3
Query: 99 METIKANSAFLCNYEVMQILQKLKDN----THKKHKREA----SLATVTYETVHYLQDT- 251
M+ ++A A+L N EV L+++++ T ++ +A +L T+ +E + YL
Sbjct: 1 MKVLEARDAYLTNAEVFFHLKEMENEQNARTQERGAAQALVCENLRTIQFEILKYLSSQG 60
Query: 252 ECKNQSAQKIQKFLEAMKKYKLTKVEKLMMVNTPPRTELEIQLIVQESEERLSEEDVQDI 431
C+ + ++ + +++LTK E L+++N P + E+ ++ EER EED+ +
Sbjct: 61 NCEGLTKERFLDCIAIFNEFELTKAEILVILNNKPSSVPELYACIEGIEERFKEEDIFKL 120
Query: 432 ISIVS 446
+ ++
Sbjct: 121 VEKIN 125
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 28.7 bits (61), Expect = 0.84
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 303 KKYKLTKVEKLMMVNTPPRTELEIQLIVQESEERLSEEDVQDIISIVSQH 452
++ K T+V L +VN PP+T + + + E L E + S+V +
Sbjct: 487 RRTKETRVNNLPIVNLPPKTIRTVSVNLLPEERALYNEQMSSAQSLVDNY 536
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 294 EAMKKYKLTKVEKLMMVNTPPRTELEIQLIVQESEERLSE 413
E +KKY TKVE++ PP + L ++ E++ +S+
Sbjct: 170 EFLKKYSSTKVERVSEA-APPPSSLNSSTVLDENDSLISQ 208
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 270 HSDFCILCLVSNVQSHM*QWQVKLLSYAFYV 178
H + ILC ++V S + W VK++ AF++
Sbjct: 1306 HPGYFILCFKASVNSPVTAWPVKVIPNAFFL 1336
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 570 KIAYFVRTRNLKHKQLAGVFWRPI 641
K +F+RT N KH+ FW+ I
Sbjct: 105 KFTHFIRTTNPKHQASVQEFWKTI 128
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 382 INCISNSVLGGVFTIINFSTLVSLYFFIASRNF*IFWAL*FLHSVS 245
+ I N+ L V+ I S LVSL++F + NF F+++VS
Sbjct: 98 LQLIKNTSLISVYIGIVISLLVSLFYFYSLPNFPYSKTCIFIYTVS 143
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 26.6 bits (56), Expect = 3.4
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +3
Query: 225 ETVHYLQDTECKNQSAQKIQKFLEAMKKYK-LTKVEKLMMVNTPPRTELEIQLIVQESEE 401
ET+ + +C+ +S +K Q L +K+Y LTK L T +TE I E EE
Sbjct: 88 ETMDDEKRKQCE-KSMRKCQIDLMYIKEYPPLTKYVSLYAEGTSEQTEETRNRIWAEMEE 146
Query: 402 RLSEEDVQDIISIVSQHLLANDSSNT 479
R + I S S + + S+T
Sbjct: 147 RFNSGRKHKIPSSGSNRVPVQEKSST 172
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +3
Query: 132 CNYEVMQILQKLKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKY 311
CN+ +L KL ++T KR+ + + + + H+ + +N+ A ++ L MK
Sbjct: 412 CNHAYNTMLCKLTEDTSSFLKRQTEMLSHSPASSHWASFSSLENEIA-NLKNLLSKMKST 470
Query: 312 KL 317
+L
Sbjct: 471 EL 472
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -1
Query: 684 YRKSFLR-YMVHAMYLLVSRKPLPVAY 607
+R++F Y+VH ++LL P P+AY
Sbjct: 1270 WRRTFTGLYIVHLLFLLTIFYPCPIAY 1296
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/26 (30%), Positives = 19/26 (73%)
Frame = +3
Query: 243 QDTECKNQSAQKIQKFLEAMKKYKLT 320
++T+C ++ QK++++LE + + LT
Sbjct: 17 KNTKCPDKFEQKVEEYLEVLNELHLT 42
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 252 LCLVSNVQSHM*QWQVKLLSYAFYVCYLLTF 160
LC ++ + SH+ WQ K+L YV L+ F
Sbjct: 693 LCNITFLGSHLCIWQPKILLGIMYVTDLVLF 723
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 573 SLCNTYHYLKEYHFT*VYSTID 508
SL N Y+Y ++ H T VYS D
Sbjct: 680 SLLNDYNYNRQSHITRVYSGTD 701
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,744
Number of Sequences: 5004
Number of extensions: 61828
Number of successful extensions: 173
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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