Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0272
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0379 - 18352103-18352246,18352994-18353146,18353258-183533... 52 4e-07
12_01_0340 - 2605770-2605916,2606353-2606595,2607260-2607531,260... 32 0.38
07_03_1489 + 26933029-26933077,26933704-26933838,26934354-269344... 32 0.50
04_04_0173 - 23294511-23294601,23294719-23294849,23295160-232954... 31 0.87
06_02_0162 + 12466027-12466354,12466894-12467546 30 2.0
04_03_0661 - 18468244-18469580,18469610-18469619 29 2.6
02_01_0033 + 202703-202705,203397-203458,203566-203665,203875-20... 29 3.5
01_06_1430 - 37309737-37309946,37310049-37310100,37310348-373104... 29 4.6
01_06_1416 - 37174913-37175006,37175299-37175441,37175932-371760... 28 6.1
07_03_0112 + 13554337-13554463,13554559-13554953 28 8.1
>12_02_0379 -
18352103-18352246,18352994-18353146,18353258-18353375,
18353785-18353792
Length = 140
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/107 (27%), Positives = 54/107 (50%)
Frame = +3
Query: 99 METIKANSAFLCNYEVMQILQKLKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQK 278
M+ K N+ FL N+EV+ L+ T A +A + YL T NQ+ +
Sbjct: 1 MKIEKTNAGFLTNFEVLDFLRSRGAKTDPMGCLGA-VAASECKVYEYLLKTPACNQTRES 59
Query: 279 IQKFLEAMKKYKLTKVEKLMMVNTPPRTELEIQLIVQESEERLSEED 419
I +F+ + +KLT +KL ++N P + + +++E +R S+++
Sbjct: 60 INEFVTRCESFKLTNADKLNVINWRPSSAADAYAMIEECGKRFSKDE 106
>12_01_0340 -
2605770-2605916,2606353-2606595,2607260-2607531,
2607691-2607733,2607822-2607899,2608026-2608085,
2608272-2608331,2609440-2609577,2609655-2609767,
2610333-2610569,2610867-2610918
Length = 480
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = -3
Query: 571 FMQYLSLFKGISLHVGLF----HNRRQERLHRLHYVLELSFASRCWLTI 437
FM Y++L G ++ F N RQ+ LH++H +L + A+RC+L I
Sbjct: 412 FMGYMALALGKLSNLEGFVIQADNLRQQTLHQMHRILTIRQAARCFLAI 460
>07_03_1489 +
26933029-26933077,26933704-26933838,26934354-26934478,
26934558-26934626,26934730-26934798,26935095-26935157,
26935280-26936533
Length = 587
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/85 (22%), Positives = 43/85 (50%)
Frame = +3
Query: 96 NMETIKANSAFLCNYEVMQILQKLKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQ 275
+++ +KA + + +++ + L D H KHK ++ YE + ++ T K Q A+
Sbjct: 71 SLDNVKAQCHMILEDKRIELKEYLNDLCHDKHKVIDNICK-KYE-LENIEITNAKKQKAE 128
Query: 276 KIQKFLEAMKKYKLTKVEKLMMVNT 350
K+ + ++ K+ K + ++NT
Sbjct: 129 KLSREMKNKCNKKMPKSQGAKVLNT 153
>04_04_0173 -
23294511-23294601,23294719-23294849,23295160-23295483,
23296016-23296147,23296225-23296373,23296536-23296670,
23296997-23297090,23297199-23297318,23298096-23298182,
23298273-23298386,23299089-23299270,23299960-23300023,
23300191-23300337,23300636-23300845,23301048-23301217,
23301355-23301477,23301589-23301661,23301765-23301857
Length = 812
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -2
Query: 284 LNFLGTLIFAFCVL*VMYSLICNSGK*SFSLMLFMCVIF*LLENLHNFI 138
LN+ G L CV+ + +CN GK +L L CVI +L++ + +
Sbjct: 691 LNYPGELSHRICVVTTILIFLCNDGKLHKNLSLGKCVIKGILQHTRHLM 739
>06_02_0162 + 12466027-12466354,12466894-12467546
Length = 326
Score = 29.9 bits (64), Expect = 2.0
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Frame = +3
Query: 183 KKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTKV-EKLMMVNTPPR 359
KK K+E SLA T T + + ++IQKF + + + + +V EKL++ +
Sbjct: 177 KKQKKEKSLAIETPRTQEIKIEQIKSKEPREEIQKFDKVLSEEEQWEVNEKLLLESYEEE 236
Query: 360 TEL--EIQLIVQESEERLSEEDVQDIISIVSQHLLAN 464
L EI+ I +E + D D + V H L N
Sbjct: 237 NNLIEEIENI-EEEDNAEQYNDFIDSLDEVGLHNLDN 272
>04_03_0661 - 18468244-18469580,18469610-18469619
Length = 448
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Frame = +3
Query: 159 QKLKDNTHKKHKREAS-LATVTYETVHYLQDTECKNQSAQKIQKFLEA-MKKYKLTKVEK 332
+K ++ K+ ++EA LA E E + + ++ ++ EA + + KL + EK
Sbjct: 85 RKEEEKAEKQRRKEAKYLAKKMQEEEAARAAEEERKRKEEEAKRAAEAALNQKKLKEKEK 144
Query: 333 LMMVNTPPRTELEIQLIVQESEERLSEEDVQDIISIVSQHLL 458
++ R + +V ES LSE+DV+ S + L
Sbjct: 145 KLLRKEKTRLRNLVAPVVAESHFSLSEDDVETACSSLDMERL 186
>02_01_0033 +
202703-202705,203397-203458,203566-203665,203875-203916,
204264-204305,204437-204589,206559-207221
Length = 354
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/78 (24%), Positives = 41/78 (52%)
Frame = +3
Query: 258 KNQSAQKIQKFLEAMKKYKLTKVEKLMMVNTPPRTELEIQLIVQESEERLSEEDVQDIIS 437
K Q+ ++ + +A KK + ++EK + + +ELE + + E++ +E+ I
Sbjct: 149 KKQAKDELDRQKQAEKKRR--RLEKALANSAAIISELEKKKQKKREEQQRLDEEGAAIAE 206
Query: 438 IVSQHLLANDSSNT*CNL 491
V+ H+L + S+ C+L
Sbjct: 207 AVALHVLIGEDSDEPCHL 224
>01_06_1430 -
37309737-37309946,37310049-37310100,37310348-37310427,
37310538-37310606,37310710-37310843,37311173-37311332,
37311483-37311554,37312113-37312246,37312386-37312521,
37313273-37313416
Length = 396
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +3
Query: 303 KKYKLTKVEKLMMVNTPPRTELEIQLIVQESEERLSEEDVQDIISIVSQHL 455
K+YK +EKL VN +ELE +L +SEE + + + I++++++ L
Sbjct: 303 KEYKGVNLEKLKFVNPDKFSELEAEL-TADSEE--ATKRFEHIVAVMNEEL 350
>01_06_1416 -
37174913-37175006,37175299-37175441,37175932-37176027,
37177125-37177364,37177456-37177812,37178020-37178097,
37178387-37178434,37179406-37179675,37179954-37180054,
37180452-37180605
Length = 526
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 514 NRRQERLHRLHYVLELSFASRCWLTI 437
N RQ+ LH+L +L A+RC+L+I
Sbjct: 451 NLRQQTLHQLRRILTTRQAARCFLSI 476
>07_03_0112 + 13554337-13554463,13554559-13554953
Length = 173
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 604 FRLRVLTKYAIFMQYLSLFKGISLHVGLF 518
+RLRVL + I + + L + LH GLF
Sbjct: 116 WRLRVLEAFVIILAFTQLLYVLMLHTGLF 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,389,029
Number of Sequences: 37544
Number of extensions: 325273
Number of successful extensions: 712
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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