Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0272
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6723| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.22 
SB_35649| Best HMM Match : M (HMM E-Value=6e-09)                       32   0.38 
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        31   0.67 
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_26679| Best HMM Match : Ion_trans_2 (HMM E-Value=2.4e-10)           31   0.89 
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)                   30   2.0  
SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35)                  29   4.7  
SB_48853| Best HMM Match : TBCA (HMM E-Value=0.98)                     28   6.2  
SB_1678| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_38118| Best HMM Match : TBCA (HMM E-Value=3.2)                      28   6.2  
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_55587| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.13)           28   8.3  
SB_53339| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_3915| Best HMM Match : IF2_N (HMM E-Value=4)                        28   8.3  
SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_6723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
 Frame = +3

Query: 147 MQILQKLKDNTHKKHKREASLATVTYET-VHYLQDTECKNQSAQKIQKFLEAMKKYKLTK 323
           ++     KD  H      + L  +   + + Y   TE +   A +IQ   E  + + +  
Sbjct: 256 LEYCSSTKDQRHISSGNTSHLRKIRGTSCLKYSSSTEDQRHIASEIQLIYERSEAHLVWN 315

Query: 324 VEKLMMVNTPPRTELEIQLIVQESEERLSEEDVQDIISIVSQHLLANDSSNT 479
              L  +    R  LEIQLI + SE  ++ E +Q I   +  HL+   +S+T
Sbjct: 316 TAHLRKIRGTSR--LEIQLIYERSERHIASE-IQLIYERLEAHLVWKYTSST 364


>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
          Length = 1279

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +3

Query: 147  MQILQK-LKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKK 308
            +++L++  K+  + K + E  L+ ++ ET HY +  E +NQ  Q++Q  +  + K
Sbjct: 933  LEVLRRDFKEAENSKLETERQLSELSKETCHYKEKVEKQNQEIQELQSKINLLYK 987


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 20/78 (25%), Positives = 38/78 (48%)
 Frame = +3

Query: 186  KHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTKVEKLMMVNTPPRTE 365
            KH+  +SLA    +  H   DT  K  +   ++K+   M++Y+L K E   + +    TE
Sbjct: 1113 KHETTSSLAQNRMKEAHQELDT-IKRDAKPLMEKYESTMREYELLKDEVEQLRSKLSTTE 1171

Query: 366  LEIQLIVQESEERLSEED 419
            L++   +++ +    E D
Sbjct: 1172 LQLDEEIRKRKALQKERD 1189


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 22/109 (20%), Positives = 51/109 (46%)
 Frame = +3

Query: 141  EVMQILQKLKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLT 320
            E ++ L++ K+   ++ +RE  L       +   +    + +  ++ ++  +  K+ ++ 
Sbjct: 1511 EALKKLEREKEEERQRLEREKELEIERQLKIKEKEVIRLQRERDEERRRREDEEKRIQME 1570

Query: 321  KVEKLMMVNTPPRTELEIQLIVQESEERLSEEDVQDIISIVSQHLLAND 467
            KVE+L  +      ELE Q+  +E E    ++  QD  ++  +  L ND
Sbjct: 1571 KVEELKRIEREKEEELERQMREKEEEMERQKQVFQD--TLEQERRLRND 1617



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 252  ECKNQSAQKIQKFLEAMKKYKLTKVEKLMMVNTPPRTELEIQLIVQES-EERLSEED 419
            E   + ++ I++FLE  ++ K+ +    M V      E+E++ + +E+ EERL +E+
Sbjct: 1394 ETNGKESKDIERFLEWDQEQKVKEEALAMEVQKELEAEMEMERLQKENEEERLRKEE 1450


>SB_26679| Best HMM Match : Ion_trans_2 (HMM E-Value=2.4e-10)
          Length = 366

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 252 LCLVSNVQSHM*QWQVKLLSYAFYV-CYLLTFGEFA*LHNYTE 127
           +C++  VQ+++ +W      Y ++V C  + FG++  L NY +
Sbjct: 233 ICIMGGVQTYLDEWTFLESVYCWFVTCSTMGFGDYVPLQNYAK 275


>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
          Length = 829

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
 Frame = +3

Query: 138 YEVMQILQKLKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQKIQK--FLEAMKKY 311
           YEV Q  QK K+   K+ + E+ L       V       C    ++  +K   ++  K  
Sbjct: 348 YEVRQNEQKEKERVMKEKRMESILKNQAELVVSGAISKTCSILQSELKEKVRIIKENKMD 407

Query: 312 KLTKVEKLMMVNTPPRTELEIQLIVQESEERLSEEDVQDIISIVSQHLLANDS 470
            +TK +   +VN   +   +I    Q+ +ER+  E+  ++I      L+  D+
Sbjct: 408 LITKNQSEFIVNDAIKKAYDIWHHEQKEQERVKNEEKMNLILKNRAELIVKDA 460


>SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35)
          Length = 1208

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 258 KNQSAQKIQKFLEAMKKYKLTKV-EKLMMVNTPPRTELEIQLIVQESEERLSEEDVQD 428
           K++ A+ + +  E  K+   T++ EK  M    P+T +  +  VQES E   +E+  D
Sbjct: 314 KSRRARTLARKKEDSKQQLFTELKEKRKMAKLEPKTRIAQKAKVQESPETSEDEEYND 371


>SB_48853| Best HMM Match : TBCA (HMM E-Value=0.98)
          Length = 220

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/75 (28%), Positives = 36/75 (48%)
 Frame = +3

Query: 177 THKKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTKVEKLMMVNTPP 356
           T+ K KR A L  +  E VH L + + + Q   KI++  E     + T       + TPP
Sbjct: 18  TYAKKKR-AVLEELCEEKVHALSEVKIQQQ---KIRRLKEEGHVLRQTAENTNTGIQTPP 73

Query: 357 RTELEIQLIVQESEE 401
            T+ +++++   S E
Sbjct: 74  STKRQLRVLTPTSLE 88


>SB_1678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/59 (27%), Positives = 35/59 (59%)
 Frame = +3

Query: 264 QSAQKIQKFLEAMKKYKLTKVEKLMMVNTPPRTELEIQLIVQESEERLSEEDVQDIISI 440
           + + K +K LEA  +++   V+K++ +NT   T + I  ++    +RLSE+ ++  ++I
Sbjct: 79  RESMKCRKGLEAYNQFQSGWVQKVLSLNTTADTRVLIAKVLY--SQRLSEDALRPWVAI 135


>SB_38118| Best HMM Match : TBCA (HMM E-Value=3.2)
          Length = 675

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/75 (28%), Positives = 36/75 (48%)
 Frame = +3

Query: 177 THKKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTKVEKLMMVNTPP 356
           T+ K KR A L  +  E VH L + + + Q   KI++  E     + T       + TPP
Sbjct: 13  TYAKKKR-AILEELCEEKVHALSEVKIQQQ---KIRRLKEKGHVLRQTAENTNTGIQTPP 68

Query: 357 RTELEIQLIVQESEE 401
            T+ +++++   S E
Sbjct: 69  STKRQLRVLTPTSLE 83


>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3003

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 475  IHNAICEVVLDVDCGINLREVIFL*IMISIA*RLRISSEPVI*SISNWQGF 627
            + N  C+   D D   NL  V+    +I++   L+  SE     ISNWQ +
Sbjct: 1507 VRNLSCDGGFDPDQANNLPVVLSYDALITLIEHLKACSEVASSRISNWQAY 1557


>SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
 Frame = +3

Query: 198 EASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTKVEKLMMVNTPPRTELEIQ 377
           ++ LA+     V   +  +CK++S  K       +++ K +K      +  PP+T  + Q
Sbjct: 558 DSELASSGRSKVKRKKKKKCKSKSPTKADSPQRPLRRSKSSK-----RIGRPPKTNKKSQ 612

Query: 378 LIVQESEERL----SEEDVQDIISIVSQHLLANDS 470
            +  +SEE +     EE+ +++ S+     +A DS
Sbjct: 613 PLDSDSEENVEQLEEEENAENLDSVNINEDVAGDS 647


>SB_55587| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.13)
          Length = 359

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 252 ECKNQSAQKIQKFLEAMKKYKLTKVEKLMMVNTPPRTELEIQLIVQES-EERLSEE 416
           E   + ++ I++FLE  ++ K+ +    M V      E+E++ + +E+ EERL +E
Sbjct: 208 ETNGKESKDIERFLEWDQEQKVKEEALAMEVQKELEAEMEMERLQKENEEERLRKE 263


>SB_53339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 894

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +3

Query: 156 LQKLKDNTHKKH-----KREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLT 320
           L+  K+N+ K H     K+  ++ATV    V YL+    + + AQK  +  +A K  +LT
Sbjct: 678 LRTFKENSDKAHGVYAEKQLVAMATVQQTLVGYLEWESHELEHAQKTDELEQAQKTDELT 737


>SB_3915| Best HMM Match : IF2_N (HMM E-Value=4)
          Length = 220

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = +3

Query: 165 LKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFL---EAMKKYKLTKVEKL 335
           L+ +  KK ++EA    +  E     Q  E + Q   K +  L   +A+ K  L   ++ 
Sbjct: 65  LEVSEEKKKEKEALKRELEKEVELKRQQEEIQKQEVIKAKASLAGPKAVGKIDLNPKKQQ 124

Query: 336 MMVNTPPRTELEIQLIVQESEER 404
             + TPP  E + +++V+  EE+
Sbjct: 125 PKLETPPVVEEKAKVVVEAKEEK 147


>SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 543  PLNNDKYCIKIAYFVRTRNLKHKQLAGVFWRPINT 647
            P+N D    + +Y + T  + +++   V W P+NT
Sbjct: 1162 PINTDTIANRESYSINTDTIANRESFPVQWNPLNT 1196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,242,682
Number of Sequences: 59808
Number of extensions: 420213
Number of successful extensions: 1084
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)