Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0272
         (693 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            29   0.14 
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         27   0.74 
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         27   0.74 
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    25   3.0  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 29.1 bits (62), Expect = 0.14
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 32  KQAKSQ*YIREVKHQVICVEFEHGNYKSQFC 124
           K+AK+  + R V+H V  V+F+ G  + QFC
Sbjct: 242 KRAKTCDWCRHVRHAVSYVDFQDGASQLQFC 272


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 26.6 bits (56), Expect = 0.74
 Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +3

Query: 6   IWPSWIY---FKNKPKASDTLEKSNTK*YVLNLNMETIKANSAFLCNYEVMQILQKLKDN 176
           +WP+W+Y   + ++P +     +  TK      + E  +  +AF  N ++ ++  +  +N
Sbjct: 464 LWPAWVYCTRYSDRPSSGPRYRR--TKQPKKRADSEEKRPRTAF-SNAQLQRLKNEFNEN 520

Query: 177 THKKHKREASLA 212
            +   KR  +L+
Sbjct: 521 RYLTEKRRQTLS 532


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 26.6 bits (56), Expect = 0.74
 Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +3

Query: 6   IWPSWIY---FKNKPKASDTLEKSNTK*YVLNLNMETIKANSAFLCNYEVMQILQKLKDN 176
           +WP+W+Y   + ++P +     +  TK      + E  +  +AF  N ++ ++  +  +N
Sbjct: 464 LWPAWVYCTRYSDRPSSGPRYRR--TKQPKKRADSEEKRPRTAF-SNAQLQRLKNEFNEN 520

Query: 177 THKKHKREASLA 212
            +   KR  +L+
Sbjct: 521 RYLTEKRRQTLS 532


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 135 NYEVMQILQKLKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQKIQK 287
           NYE M+IL  L   +  + KR+ +   +   T  +  D E   + AQ +++
Sbjct: 373 NYETMKILGSLYATSSSQSKRDIAKNHLKKVTEQFPDDVEAWIELAQILEQ 423


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 725,951
Number of Sequences: 2352
Number of extensions: 13671
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70250040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)