Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0272
         (693 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2496|AAS65391.1|  238|Drosophila melanogaster CG4875-PB...    96   3e-20
AY061486-1|AAL29034.1|  222|Drosophila melanogaster LD45115p pro...    81   1e-15
AE014298-2497|AAF48678.1|  222|Drosophila melanogaster CG4875-PA...    81   1e-15
AE014297-959|AAF54392.2| 1112|Drosophila melanogaster CG8176-PB,...    31   1.1  
AY061576-1|AAL29124.1|  987|Drosophila melanogaster SD02803p pro...    31   1.5  
AE014296-1090|AAF50681.2|  991|Drosophila melanogaster CG10289-P...    29   4.5  

>AE014298-2496|AAS65391.1|  238|Drosophila melanogaster CG4875-PB,
           isoform B protein.
          Length = 238

 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 46/118 (38%), Positives = 74/118 (62%)
 Frame = +3

Query: 99  METIKANSAFLCNYEVMQILQKLKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQK 278
           METI    ++L N EVMQILQK+K    K   R  +LATVTYE + YL+++ CK Q+ + 
Sbjct: 1   METINPTFSYLTNLEVMQILQKIKSTKKKFGMR--NLATVTYEALQYLEESPCKTQTREN 58

Query: 279 IQKFLEAMKKYKLTKVEKLMMVNTPPRTELEIQLIVQESEERLSEEDVQDIISIVSQH 452
           I  +++ +  Y+L   E L M+N PP + L  QL++ +++  L++E+ + II +  +H
Sbjct: 59  IMNYVKDLSSYRLKSQEILQMINDPPTSALHTQLLIDDNKAPLTDEENEKIIQLSYKH 116


>AY061486-1|AAL29034.1|  222|Drosophila melanogaster LD45115p
           protein.
          Length = 222

 Score = 81.4 bits (192), Expect = 1e-15
 Identities = 38/102 (37%), Positives = 64/102 (62%)
 Frame = +3

Query: 147 MQILQKLKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTKV 326
           MQILQK+K    K   R  +LATVTYE + YL+++ CK Q+ + I  +++ +  Y+L   
Sbjct: 1   MQILQKIKSTKKKFGMR--NLATVTYEALQYLEESPCKTQTRENIMNYVKDLSSYRLKSQ 58

Query: 327 EKLMMVNTPPRTELEIQLIVQESEERLSEEDVQDIISIVSQH 452
           E L M+N PP + L  QL++ +++  L++E+ + II +  +H
Sbjct: 59  EILQMINDPPTSALHTQLLIDDNKAPLTDEENEKIIQLSYKH 100


>AE014298-2497|AAF48678.1|  222|Drosophila melanogaster CG4875-PA,
           isoform A protein.
          Length = 222

 Score = 81.4 bits (192), Expect = 1e-15
 Identities = 38/102 (37%), Positives = 64/102 (62%)
 Frame = +3

Query: 147 MQILQKLKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTKV 326
           MQILQK+K    K   R  +LATVTYE + YL+++ CK Q+ + I  +++ +  Y+L   
Sbjct: 1   MQILQKIKSTKKKFGMR--NLATVTYEALQYLEESPCKTQTRENIMNYVKDLSSYRLKSQ 58

Query: 327 EKLMMVNTPPRTELEIQLIVQESEERLSEEDVQDIISIVSQH 452
           E L M+N PP + L  QL++ +++  L++E+ + II +  +H
Sbjct: 59  EILQMINDPPTSALHTQLLIDDNKAPLTDEENEKIIQLSYKH 100


>AE014297-959|AAF54392.2| 1112|Drosophila melanogaster CG8176-PB,
           isoform B protein.
          Length = 1112

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 20/77 (25%), Positives = 36/77 (46%)
 Frame = +3

Query: 141 EVMQILQKLKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLT 320
           E+++ + K  D  HKKHK      + T + V  L+     N S +  +K    +KK +  
Sbjct: 93  ELVKDVAKYADELHKKHKSVKEEESQTLDKVQELEKLRKDNGSHKDAEKLESKLKKLQ-E 151

Query: 321 KVEKLMMVNTPPRTELE 371
           + + L+  + P + E E
Sbjct: 152 EYKALLDKHNPIKNEFE 168


>AY061576-1|AAL29124.1|  987|Drosophila melanogaster SD02803p
           protein.
          Length = 987

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +3

Query: 168 KDNTHKKHKRE---ASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTKVEKLM 338
           ++  HK+H  +   A+ AT + +    +QD E KN          +   +  L  ++K  
Sbjct: 504 ENQEHKEHMGQVEAAAEATASEDAEPKVQDNEVKNNEVAGESPTDQQESEATLNDLDKTK 563

Query: 339 MVNTPPRTELEIQLIV 386
            V +PP +E++  LIV
Sbjct: 564 TVPSPPPSEMQSHLIV 579


>AE014296-1090|AAF50681.2|  991|Drosophila melanogaster CG10289-PA
           protein.
          Length = 991

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +3

Query: 180 HKKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTKVEKLMMVNTPPR 359
           H      A+ AT + +     QD E KN          +   +  L  ++K   V +PP 
Sbjct: 512 HMSQVEAAAEATASEDAEPKAQDNEVKNSEVDGESPTDQQESEATLNDLDKTKTVPSPPP 571

Query: 360 TELEIQLIV 386
           +E++  LIV
Sbjct: 572 SEMQSHLIV 580


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,351,575
Number of Sequences: 53049
Number of extensions: 600453
Number of successful extensions: 1474
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)