Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0272
(693 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46935-6|CAL36509.1| 128|Caenorhabditis elegans Hypothetical pr... 84 8e-17
U29536-2|AAA68790.1| 759|Caenorhabditis elegans Brf (transcript... 31 0.78
Z83127-6|CAB05633.1| 327|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z80214-6|CAB02266.1| 327|Caenorhabditis elegans Hypothetical pr... 29 4.2
U41016-4|AAP46275.1| 809|Caenorhabditis elegans Hypothetical pr... 29 4.2
U41016-2|AAM51496.1| 899|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z92782-11|CAE17813.1| 382|Caenorhabditis elegans Hypothetical p... 28 5.5
Z78413-1|CAB01663.1| 727|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr... 28 5.5
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 28 7.3
U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical pr... 28 7.3
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 28 7.3
AJ010708-1|CAA09308.1| 1158|Caenorhabditis elegans calcium ATPas... 27 9.6
AF125446-4|AAD12806.2| 1158|Caenorhabditis elegans Hypothetical ... 27 9.6
AF000198-6|AAB53056.2| 526|Caenorhabditis elegans Calcium chann... 27 9.6
>Z46935-6|CAL36509.1| 128|Caenorhabditis elegans Hypothetical
protein M106.7 protein.
Length = 128
Score = 84.2 bits (199), Expect = 8e-17
Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Frame = +3
Query: 99 METIKANSAFLCNYEVMQILQKLK--DNTHKKHKREASLATVTYETVHYLQDTECKNQSA 272
ME +K L N EV+ L LK ++ ++H+R L+TV YET YL + Q+
Sbjct: 1 MEVLKTRETMLTNQEVLSFLNALKKEEDNKQQHERCKQLSTVIYETKKYLNTSPAVTQNE 60
Query: 273 QKIQKFLEAMKKYKLTKVEKLMMVNTPPRTELEIQLIVQESEERL-SEEDVQDIISIVSQ 449
I + + + +KLT E L ++N P T +IQL+++E+EER SEED++ ++S VS+
Sbjct: 61 AVICELIPKLAPFKLTGAETLQVINLRPSTTADIQLLIEETEERFPSEEDLEKLVSTVSE 120
Query: 450 HL 455
L
Sbjct: 121 CL 122
>U29536-2|AAA68790.1| 759|Caenorhabditis elegans Brf (transcription
factor) homologprotein 1 protein.
Length = 759
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Frame = -3
Query: 172 SFNFWRICITS*LHRNAELAFIVSMFKF------NTYHLVFDFSNVS 50
+FNF+++C++ L R + +V++ + NT HL+ DFS+V+
Sbjct: 105 AFNFYKMCVSRNLTRGRNRSSVVAVCMYITCRLENTAHLLLDFSDVT 151
>Z83127-6|CAB05633.1| 327|Caenorhabditis elegans Hypothetical
protein C27D8.1 protein.
Length = 327
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 222 YETVHYLQDTECKNQSAQKIQKFLEAMKKYKL 317
+ V+ +QD + K QSA K+++ +E K KL
Sbjct: 35 FGAVYLVQDNKSKKQSAMKVERKIEKRKHSKL 66
>Z80214-6|CAB02266.1| 327|Caenorhabditis elegans Hypothetical
protein C27D8.1 protein.
Length = 327
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 222 YETVHYLQDTECKNQSAQKIQKFLEAMKKYKL 317
+ V+ +QD + K QSA K+++ +E K KL
Sbjct: 35 FGAVYLVQDNKSKKQSAMKVERKIEKRKHSKL 66
>U41016-4|AAP46275.1| 809|Caenorhabditis elegans Hypothetical
protein R11G1.6d protein.
Length = 809
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/84 (23%), Positives = 34/84 (40%)
Frame = +3
Query: 33 NKPKASDTLEKSNTK*YVLNLNMETIKANSAFLCNYEVMQILQKLKDNTHKKHKREASLA 212
N+P AS + K + +K CN V Q Q+++ + K+ +
Sbjct: 705 NEPAASRLMRKGKKLHIYNDHTFVAVKVKGGATCN--VCQ--QRIRSSFSKQAYQCRDCK 760
Query: 213 TVTYETVHYLQDTECKNQSAQKIQ 284
V ++T HY D C + K+Q
Sbjct: 761 MVCHKTCHYKTDAFCTQSNVSKLQ 784
>U41016-2|AAM51496.1| 899|Caenorhabditis elegans Hypothetical protein
R11G1.6a protein.
Length = 899
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/84 (23%), Positives = 34/84 (40%)
Frame = +3
Query: 33 NKPKASDTLEKSNTK*YVLNLNMETIKANSAFLCNYEVMQILQKLKDNTHKKHKREASLA 212
N+P AS + K + +K CN V Q Q+++ + K+ +
Sbjct: 795 NEPAASRLMRKGKKLHIYNDHTFVAVKVKGGATCN--VCQ--QRIRSSFSKQAYQCRDCK 850
Query: 213 TVTYETVHYLQDTECKNQSAQKIQ 284
V ++T HY D C + K+Q
Sbjct: 851 MVCHKTCHYKTDAFCTQSNVSKLQ 874
>Z92782-11|CAE17813.1| 382|Caenorhabditis elegans Hypothetical
protein F14F8.11 protein.
Length = 382
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -2
Query: 692 FFFIENLFCDTWCTQCIYWSPENPCQLLML*ITGS 588
F+F+ + + T C++W PEN ++ + I+G+
Sbjct: 339 FYFMSSEYRMTAKHMCLFWKPENSVSVINISISGN 373
>Z78413-1|CAB01663.1| 727|Caenorhabditis elegans Hypothetical
protein T01C3.1 protein.
Length = 727
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +3
Query: 165 LKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTKV 326
++ +T KK + + +AT+TY+T H + ++ K + + ++ YK+T V
Sbjct: 169 MRVSTVKKMEEDCRMATITYKTAH-PKPSKVLTSGTPKSKAKAKTIEGYKVTSV 221
>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical
protein K02B12.5 protein.
Length = 1204
Score = 28.3 bits (60), Expect = 5.5
Identities = 29/99 (29%), Positives = 43/99 (43%)
Frame = +3
Query: 132 CNYEVMQILQKLKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKY 311
C + I Q L DN R+ S Y+ + Y + +N+ ++ KF E +K
Sbjct: 610 CTNGYVDIAQLLIDNRASVDLRD-SAGWTAYQHLKYERRFIDENEYTERHLKFAENLKI- 667
Query: 312 KLTKVEKLMMVNTPPRTELEIQLIVQESEERLSEEDVQD 428
LT K + PP I I QE EE + +DV+D
Sbjct: 668 -LTANYKAPVNIPPPHPINRIPRIHQE-EEDIPPDDVED 704
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 27.9 bits (59), Expect = 7.3
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Frame = +3
Query: 30 KNKPKASDTLEKSNTK*YVLNLNMETIKANSAFLCNYEVMQILQKLKDNTHK-KHKREAS 206
++ PKAS N K +VL + ETI + L + E + + D H+ K+ +
Sbjct: 705 RSGPKASKMKTTENMKFHVLLTSYETINMDKTILSSIEWGAL---VVDEAHRLKNNQSLF 761
Query: 207 LATVTYETVHY---LQDTECKNQSAQKIQKFLEAMKKYKLTKVE 329
+ T+HY L T +N + +++ L + K + ++E
Sbjct: 762 FKNLNEYTIHYRVLLTGTPLQN-NLEELFHLLNFLSKERFNQLE 804
>U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical
protein F23F12.8 protein.
Length = 980
Score = 27.9 bits (59), Expect = 7.3
Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Frame = +3
Query: 135 NYEVMQI-LQKLKDNTHKKHKREASLATVTYETVHYLQ-DTECKNQSAQKIQKFLEAMKK 308
N E+ +I L++ K + + E ++ + LQ + + KN+ ++++ LEA +K
Sbjct: 371 NRELERIRLEEKKRENERVRQEEIAMEISKIRELERLQLERQRKNE---RVRQELEAARK 427
Query: 309 YKLTKVEKLMMVNTPPRTELEIQLIVQESEER 404
YKL + E+ + + ++E++ I Q+ E R
Sbjct: 428 YKLQEEERQRKIQ---QQKVEMEQIRQQEEAR 456
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 27.9 bits (59), Expect = 7.3
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Frame = +3
Query: 30 KNKPKASDTLEKSNTK*YVLNLNMETIKANSAFLCNYEVMQILQKLKDNTHK-KHKREAS 206
++ PKAS N K +VL + ETI + L + E + + D H+ K+ +
Sbjct: 705 RSGPKASKMKTTENMKFHVLLTSYETINMDKTILSSIEWGAL---VVDEAHRLKNNQSLF 761
Query: 207 LATVTYETVHY---LQDTECKNQSAQKIQKFLEAMKKYKLTKVE 329
+ T+HY L T +N + +++ L + K + ++E
Sbjct: 762 FKNLNEYTIHYRVLLTGTPLQN-NLEELFHLLNFLSKERFNQLE 804
>AJ010708-1|CAA09308.1| 1158|Caenorhabditis elegans calcium ATPase
protein.
Length = 1158
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 664 IHGARNVFIGLQKTPASCLCFRLRVLTKYAIFMQY 560
IHG RNVF G+ P C+ + + L + + +Q+
Sbjct: 955 IHGERNVFKGIFTNPIFCVIW-ITTLISHILIVQF 988
>AF125446-4|AAD12806.2| 1158|Caenorhabditis elegans Hypothetical
protein R05C11.3 protein.
Length = 1158
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 664 IHGARNVFIGLQKTPASCLCFRLRVLTKYAIFMQY 560
IHG RNVF G+ P C+ + + L + + +Q+
Sbjct: 955 IHGERNVFKGIFTNPIFCVIW-ITTLISHILIVQF 988
>AF000198-6|AAB53056.2| 526|Caenorhabditis elegans Calcium channel,
beta subunit protein1 protein.
Length = 526
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 12 PSWIYFK-NKPKASDTLEKSNTK*YVLNLNMETIKANSAFLCNYEVMQIL 158
P +Y K + PK L KS K N+N++ + A C E+ +L
Sbjct: 311 PIHVYIKISSPKVLQRLIKSRGKSQSRNMNVQMVAAEKLAQCQAELFDVL 360
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,255,108
Number of Sequences: 27780
Number of extensions: 336849
Number of successful extensions: 903
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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