Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0272
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   2.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   6.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.4  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = -3

Query: 634 LQKTPASCLCFRLRVLTKYAIFMQYLSLFKGISLHVGLFHNRRQERL 494
           + K P  C+C     + +YAI  Q ++ F          H RR   L
Sbjct: 106 ITKAPLECMCRPCTSVEEYAIIPQEIAGFADEGPFTTSAHFRRSSDL 152


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 559 LSLFKGISLHVGLFHNRRQERLHRLHYVLELS 464
           L +   + +   L ++ R  R+H+  Y+L LS
Sbjct: 352 LQMIISVKIIQNLAYSGRMNRIHKNEYMLALS 383


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -2

Query: 140 IITQKCRIGFYSFHVQIQHISLGV*LL*CITGFWLVFEIYPRR 12
           +   K R+G+Y FH  I    +   ++     FW+  E  P R
Sbjct: 237 VFVLKRRLGYYLFHTYIPTCLI---VIMSWVSFWIKPEAAPAR 276


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = -3

Query: 175 LSFNFWRICITS*LHRNAELAFIVSMFKFNTYHLVFDFSNVSLAFG 38
           +SFN W + +   +   A+  + +  FK N + + + +      FG
Sbjct: 1   MSFNIWWLILYFSIVCQAKAHYSLRDFKANIFQVKYQWKYFDYNFG 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,543
Number of Sequences: 438
Number of extensions: 4175
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)