Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0272
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62950.1 68418.m07898 expressed protein                             60   2e-09
At5g52550.1 68418.m06525 expressed protein                             33   0.24 
At1g63600.1 68414.m07189 protein kinase-related low similarity t...    29   2.2  
At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive eff...    29   2.9  
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela...    29   2.9  
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil...    28   5.1  
At3g09350.1 68416.m01109 armadillo/beta-catenin repeat family pr...    28   5.1  
At1g65430.1 68414.m07423 zinc finger protein-related contains we...    28   6.8  
At1g08320.1 68414.m00920 bZIP family transcription factor contai...    27   8.9  

>At5g62950.1 68418.m07898 expressed protein
          Length = 139

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 35/119 (29%), Positives = 61/119 (51%)
 Frame = +3

Query: 99  METIKANSAFLCNYEVMQILQKLKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQK 278
           M+ +KAN+  L N+EV+  L   +  +    +  A +A   Y+   YL +T    Q+ + 
Sbjct: 1   MKIVKANAGALTNFEVLDFLNS-RGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRES 59

Query: 279 IQKFLEAMKKYKLTKVEKLMMVNTPPRTELEIQLIVQESEERLSEEDVQDIISIVSQHL 455
           I KF +  K +KL K E L ++N  P + +E+  I++  ++R  E D   I+ +V   L
Sbjct: 60  INKFADKCKDFKLAKAEILNIINLRPSSIVELLPIIENLDDR--EIDTDGILELVKDLL 116


>At5g52550.1 68418.m06525 expressed protein
          Length = 360

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 23/95 (24%), Positives = 46/95 (48%)
 Frame = +3

Query: 183 KKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTKVEKLMMVNTPPRT 362
           K+ K+E  L     E   Y      K Q  +++++  +A +K +  ++EK +  +   R 
Sbjct: 161 KQMKKEGQLDAAVEEDSAYAAK---KKQEREELERIKQAERKKR--RIEKSIATSAAIRA 215

Query: 363 ELEIQLIVQESEERLSEEDVQDIISIVSQHLLAND 467
           ELE + + +  E+R  +E+   I   V+ H+L  +
Sbjct: 216 ELEKKKLRKLEEQRRLDEEGAAIAEAVALHVLLGE 250


>At1g63600.1 68414.m07189 protein kinase-related low similarity to
           receptor-like protein kinase 5 [Arabidopsis thaliana]
           GI:13506747; contains Pfam profile: PF01657 Domain of
           unknown function DUF26
          Length = 302

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 693 FFFYRKSFLRYMVHAMYLLVSRKPLPVAYALDY 595
           F FY +  +RY   + + LV  +P  + Y+L Y
Sbjct: 119 FIFYEECMVRYSDSSFFSLVDERPYIIRYSLSY 151


>At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 871

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 582 FVRTRNLKHKQLAGVFWRPINTLRAPCIA 668
           F++TRN KHK+   + W P  T +   +A
Sbjct: 255 FLKTRNCKHKESVKLIWGPPGTGKTKTVA 283


>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
           similar to nuclear matrix constituent protein 1 (NMCP1)
           [Daucus carota] GI:2190187
          Length = 1128

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 261 NQSAQKIQKFLEAMKKYKLTKV-EKLMMVNTPPRTELEIQLIVQESEERLSEEDVQ 425
           + S +K++K  +AM K K  +V EK M +    +T  E + I+Q  E+RLS E  Q
Sbjct: 419 DHSEEKLEKRNQAMNK-KFDRVNEKEMDLEAKLKTIKEREKIIQAEEKRLSLEKQQ 473


>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
           protein / CHD family protein similar to chromatin
           remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
           GI:6478518; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain, PF00628: PHD-finger, PF00385:
           'chromo' (CHRromatin Organization MOdifier)
          Length = 2228

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +3

Query: 267 SAQKIQKFLEAMKKYKLTKVEKLMMVNTPPRTE 365
           SA+K+++  + +  + L +++K  M N PP+TE
Sbjct: 881 SAEKVEELKKLVAPHMLRRLKKDAMQNIPPKTE 913


>At3g09350.1 68416.m01109 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 363

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/84 (20%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +3

Query: 228 TVHYLQDTECKNQSAQKIQK-FLEAMKKYKLTKVEKLMMVNTPPRTELEIQLIVQESEER 404
           ++ +   T    Q +++ +K F+EAM+   +  V+++  +    +T  ++ +     E  
Sbjct: 15  SLSHADGTRPTRQLSEEDRKWFMEAMQSQTVDVVKRMKEITLVMQTPEQVLV-----EHG 69

Query: 405 LSEEDVQDIISIVSQHLLANDSSN 476
           ++ ED+QD++  + +H+ + D +N
Sbjct: 70  VTPEDIQDLLDELQEHVESIDMAN 93


>At1g65430.1 68414.m07423 zinc finger protein-related contains weak
           similarity to zinc finger proteins and a Pfam:PF01485
           IBR domain
          Length = 567

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = +3

Query: 111 KANSAFLCN-YEVMQILQKLKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQKIQK 287
           K    + CN YE  +     +D  + + ++   +A  + E   +  +    NQS++  QK
Sbjct: 326 KTGGFYACNRYEAAK-----QDGIYDETEKRREMAKNSLERYTHYYERWATNQSSR--QK 378

Query: 288 FLEAMKKYKLTKVEKLMMVNTPPRTELE 371
            L  +KK +   +EKL  +   P ++L+
Sbjct: 379 ALLDLKKMQTDDIEKLSDIQCQPESQLK 406


>At1g08320.1 68414.m00920 bZIP family transcription factor contains
           Pfam profile: PF00170 bZIP transcription factor
          Length = 481

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 514 NRRQERLHRLHYVLELSFASRCWLTI 437
           N RQ+ +H+L  +L +  A+RC+L I
Sbjct: 408 NLRQQTVHQLRRILTVRQAARCFLVI 433


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,842,308
Number of Sequences: 28952
Number of extensions: 291962
Number of successful extensions: 683
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)