Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0270
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    28   0.080
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          26   0.24 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   1.7  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   1.7  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   1.7  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   2.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.0  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   5.3  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   9.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.2  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 0.080
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 254 AFKLSLD-SPQTSSSTGDNHAAFKLSFDSPQTSSSTGTCKLISA 382
           +F LSL  SP  SS    +H   +   DSP  +S    CKL S+
Sbjct: 38  SFPLSLGMSPYASSQHHHHHLQARPPQDSPYDASVAAACKLYSS 81


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 474 SVNYLALYDGYPPHHSPPRLEVVSYLVIVVRAEISLQVPVLLEVCGE 334
           S++YL++ +  PP   PPR+E  +  V  V     L   ++ + C E
Sbjct: 720 SISYLSMENNAPPPPPPPRVESFAETVRTVSKIPPLYKDLVAKRCEE 766


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 235 YTASSRSIQAQSRLTADFEQH--WRQSRSIQAQFRLTANFEQHWHLQANLSTDNDN 396
           Y   +R I+  S L  +  Q   W Q+R ++ + R+         + A+LST N N
Sbjct: 277 YLTRARRIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLSTSNSN 332


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 235 YTASSRSIQAQSRLTADFEQH--WRQSRSIQAQFRLTANFEQHWHLQANLSTDNDN 396
           Y   +R I+  S L  +  Q   W Q+R ++ + R+         + A+LST N N
Sbjct: 66  YLTRARRIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLSTSNSN 121


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 235 YTASSRSIQAQSRLTADFEQH--WRQSRSIQAQFRLTANFEQHWHLQANLSTDNDN 396
           Y   +R I+  S L  +  Q   W Q+R ++ + R+         + A+LST N N
Sbjct: 66  YLTRARRIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLSTSNSN 121


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 540 FGPSVHRANITRSVEDLPFVVYSYNTKYI 626
           F P   R  +  SVE L  +V+  NT+ +
Sbjct: 489 FNPHTGRVEVLDSVEKLETLVHQLNTEVL 517


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 108  HNPRILADKSKSSTVVPQQASIAAS-TGPSQPTHRAS*PYG 227
            +NP I A + KS   V Q+ SIA +    ++P+ +   P G
Sbjct: 1407 NNPSISAFRKKSLAYVQQRMSIAPNRVSQARPSVQLRYPNG 1447


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 108  HNPRILADKSKSSTVVPQQASIAAS-TGPSQPTHRAS*PYG 227
            +NP I A + KS   V Q+ SIA +    ++P+ +   P G
Sbjct: 1407 NNPSISAFRKKSLAYVQQRMSIAPNRVSQARPSVQLRYPNG 1447


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 523 LYICALS*KCRKRDSGICQLSC 458
           LY+ A+    RK DSGI    C
Sbjct: 13  LYLTAIYVSSRKSDSGIWYWQC 34



 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 611 VGIYDKGKIFHRAGD 567
           V +  KG+IFH  GD
Sbjct: 365 VNMLPKGEIFHMGGD 379


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 132 KSKSSTVVPQQASIAASTGP 191
           K K  TVVP+   +  + GP
Sbjct: 152 KCKPKTVVPEVGGVEEAKGP 171


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 438 PHHSPPR 418
           PHH PPR
Sbjct: 741 PHHQPPR 747


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 438 PHHSPPR 418
           PHH PPR
Sbjct: 633 PHHQPPR 639


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,539
Number of Sequences: 336
Number of extensions: 3155
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)