Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0270
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 29 0.61
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.81
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c... 28 1.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.4
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.5
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 27 3.3
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 3.3
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 3.3
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.3
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 4.3
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 26 4.3
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 26 5.7
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.7
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 5.7
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 25 7.5
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 7.5
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 25 9.9
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 25 9.9
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 29.1 bits (62), Expect = 0.61
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 100 SATTIPAF-SQIKVSRRQSSHSKPASQPQQDHRSRLTALPDPTACTYTASSRSIQAQSRL 276
S T +PA S ++ +QSS S P QP + P P A +Y S++ + L
Sbjct: 290 STTPLPAAASYTSMNMKQSSASHPVLQPPAPSTLQFNPSPSPAAPSYPPVDASVKQAADL 349
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.81
Identities = 21/88 (23%), Positives = 41/88 (46%)
Frame = +2
Query: 155 PTASQHRSLNRTIAADSPRFLTLRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFD 334
PT++ L+ + S + + TL + S+ P TSSS+ ++ S
Sbjct: 202 PTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSI--PSTSSSSSSTSSSLSSSSS 259
Query: 335 SPQTSSSTGTCKLISARTTITKYDTTSS 418
S SSS+ + +IS+ ++ + T++S
Sbjct: 260 SSTASSSSSSSSIISSSSSSSSSPTSTS 287
Score = 26.2 bits (55), Expect = 4.3
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +3
Query: 126 ADKSKSSTVVPQQASIAASTGPSQPTHRAS*PYGMHLHCLIAQHSSSVSTHRRLRAALAT 305
A S SS+ + + +++S+ PS + + + + SSS ST L ++ ++
Sbjct: 201 APTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSS 260
Query: 306 ITQHSSSVST 335
T SSS S+
Sbjct: 261 STASSSSSSS 270
Score = 26.2 bits (55), Expect = 4.3
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 1/125 (0%)
Frame = +2
Query: 47 PATEQSQPSD*SSAHQELRLPQSPHSRR*K*VVDSRPTASQH-RSLNRTIAADSPRFLTL 223
P+T S S SS + S ++ S ++S S + TI++ S +
Sbjct: 241 PSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSS----SS 296
Query: 224 RHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFDSPQTSSSTGTCKLISARTTITKY 403
+PT S S SS+ + + SF S TSSS+ S+ ++ +
Sbjct: 297 SSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFS 356
Query: 404 DTTSS 418
TTSS
Sbjct: 357 STTSS 361
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +3
Query: 135 SKSSTVVPQQASIAASTGPSQPTH-RAS*PYGMHLHCLIAQHSSSVSTHRRLRAALATIT 311
S SST+ +S ++S+ S + ++S + + + SS++++ + A+ +
Sbjct: 338 SSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSS 397
Query: 312 QHSSSVSTHR 341
HSSS+S+H+
Sbjct: 398 SHSSSLSSHK 407
>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 569 DICSVDRRSECCCSELVYMRFILKMS*ARFRHLSI 465
D+C+V R CC+ +++ L F HL I
Sbjct: 448 DLCNVSRAGGGCCTAAAFIKCFLAQKDLSFAHLDI 482
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.4
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +2
Query: 221 LRHAPTLPHRA--AFKLSLDSPQTSSSTGDNHAAFKLSFDSPQTSSST-GTCKLISARTT 391
L PTL RA ++ + S +SS T + A+ L+ S SSST T ++
Sbjct: 49 LSSVPTLLKRATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSS 108
Query: 392 ITKYDTTSS 418
+T TSS
Sbjct: 109 LTSSSATSS 117
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/81 (24%), Positives = 37/81 (45%)
Frame = +2
Query: 155 PTASQHRSLNRTIAADSPRFLTLRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFD 334
PT S + + +I L+ PT+P + S+ P TS+S+ D +++ L
Sbjct: 223 PTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSS-PLPTT 281
Query: 335 SPQTSSSTGTCKLISARTTIT 397
S ++ST ++ T +T
Sbjct: 282 STSCTTSTSIPPTGNSTTPVT 302
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +2
Query: 275 SPQTSSSTGDNHAAFKLSFDSPQTSSSTGTCKLISARTTITKYDTTSS 418
S +SSS+ + ++ K S S +SSS+ + K S+ ++ +K ++SS
Sbjct: 156 SSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSS 203
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +1
Query: 178 PQQDHR---SRLTALP-DPTACTYTASSRSIQAQSRLTADFEQ--HWRQSRSIQ 321
P DH S + LP DP + +Y ASS+ + +LT+ ++ W S S+Q
Sbjct: 197 PALDHAVSSSSSSDLPSDPNSASYIASSKQKASSLKLTSSLKKFYSWTSSSSLQ 250
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 266 SLDSPQTSSSTGDNHAAFKLSFDSPQTSSSTGTCKLISARTTITKYDTTSS 418
S DS SSS + + S DS TSSS+ + S+ + DTT+S
Sbjct: 276 SSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTS 326
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -1
Query: 525 TCIYALYLE--NVVSEIQASVNYLALYDGYPPHH 430
+CI L+L+ + +I+ + L LYD YPP H
Sbjct: 506 SCIKRLHLKLSKGIMDIKVLTHQLMLYDLYPPAH 539
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 3.3
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +2
Query: 233 PTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFDSPQTSSSTGTCKL----ISARTTITK 400
P+L RA+ S S S+S + S S TSSS+GT + +SA I
Sbjct: 46 PSLYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVITASDVSASNEIIS 105
Query: 401 YDTTSSL 421
T +S+
Sbjct: 106 SSTNNSI 112
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 220 PTACTYTASSRSIQAQSRLTADFEQHWRQ 306
P AC + AS S +++ LTA + +++Q
Sbjct: 77 PVACLFVASLNSSRSEEELTATVKDYFQQ 105
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +2
Query: 182 NRTIAADSPRFLTLRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFDSPQTSS 352
N+ AD F T+R + T R S D+ + + + +N A + DSP S
Sbjct: 115 NKYQDADVDEFNTIRASETASQRPPIPFSSDTLKKTYLSSENDARYPSVSDSPYCES 171
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 108 HNPRILADKSKSSTVVPQQASIAASTGPSQPTHRAS 215
H P + DK+ VP +A++ + G S+P AS
Sbjct: 65 HLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 5.7
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 108 HNPRILADKSKSSTVVPQQASIAASTGPSQPTHRAS*PYGMHLHCLIAQHSSSVS-THRR 284
+NP+ + S +++ VP+ S + S + T Y +H+ +I + S S + RR
Sbjct: 198 NNPKEIEMNSDTTSSVPKSGSTSFSANVTSSTSMVYLLYSVHVDKIIQYYVDSFSVSERR 257
Query: 285 LRAALATITQHSSSVS 332
L A + + + S
Sbjct: 258 LVNTRAVVLKEVQAPS 273
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 5.7
Identities = 21/93 (22%), Positives = 43/93 (46%)
Frame = +2
Query: 140 VVDSRPTASQHRSLNRTIAADSPRFLTLRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAF 319
V+ + ++S S + ++ SP + T P ++ S S +SSS+ + ++
Sbjct: 122 VLQTTVSSSSVSSTTSSSSSSSPSSSSTT-TTTSPSSSSSSSSSSSSSSSSSSSSSSSSS 180
Query: 320 KLSFDSPQTSSSTGTCKLISARTTITKYDTTSS 418
S S +SSS+ + S+ ++ + TSS
Sbjct: 181 SSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSS 213
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 7.5
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Frame = +2
Query: 155 PTASQHRSLNRTIAADSPRFLTLRH------APTLPHRAAFKLSLDSPQTSSSTGDNHAA 316
P S R+ +RT++ S +L +RH L H+ ++ S S+ST H
Sbjct: 234 PYTSPLRTPSRTLSRSSSHYLWVRHGKLTRSVSLLQHKTPRRIRPKSLSKSNSTPLKH-- 291
Query: 317 FKLSFDSPQTSSSTGTCKLISARTTITKYDTTSS 418
LS P ++ TG +S T +SS
Sbjct: 292 --LSAQKPNSNYYTGPPTPVSISNTPENIHPSSS 323
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 236 TLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFDSPQTSSSTGT 364
T PH + + SL+SP + S+ + L DSP + ST T
Sbjct: 64 TFPHGSNKQASLESPVSYSNPIPSLTWLSLDGDSPDSLVSTPT 106
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 112 IPAFSQIKVSRRQSSHSKPASQPQQDHRSRLTALP 216
+P S + Q HS PAS P +SR +LP
Sbjct: 315 LPTLSAVTSDSAQP-HSLPASMPSSQPQSRSESLP 348
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 263 LSLDSPQTSSSTGDNHAAFKLSFDSPQTSSSTGTCKLISARTTIT 397
+S P + G+N+A K S + +SSST L ++ +++
Sbjct: 1 MSFQQPSNGAQGGNNNALEKTSSNEATSSSSTQVSSLSASGISVS 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,776
Number of Sequences: 5004
Number of extensions: 50579
Number of successful extensions: 239
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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