Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0270
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0057 + 21995018-21997006 31 0.84
05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,9... 30 1.9
01_06_0950 - 33265653-33265802,33265905-33265961,33266046-332661... 30 1.9
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 2.6
07_01_0917 + 7735696-7735896,7735907-7736404,7736481-7736813,773... 29 2.6
02_05_0311 + 27782110-27782326,27784121-27784268,27784394-277844... 29 2.6
04_04_1342 + 32775582-32775796,32776589-32776794,32777356-327774... 28 5.9
12_01_0183 - 1350451-1350477,1350887-1350969,1350977-1352696,135... 28 7.8
11_01_0183 - 1440460-1440467,1440832-1440957,1440965-1442858 28 7.8
>05_05_0057 + 21995018-21997006
Length = 662
Score = 31.1 bits (67), Expect = 0.84
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2
Query: 146 DSRPTASQHRSLNRTIAADSPRFLTLRHAPTLPHRAAFKLSLDSPQTSSS 295
D+ ++ + RSL RT + P F P LP AA DSP SS
Sbjct: 423 DTSSSSRRRRSLERTSSVRRPSFEVTDAKPVLPAAAAITSVKDSPLIGSS 472
>05_01_0002 -
8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,
9802-9902,10016-10651,10820-10899,11014-11673,
11787-12041,12154-12281,12515-12669,12735-12919,
13020-13049,13164-13239,13371-13504,13703-13994,
14400-14567,14647-14745,14843-15014,15103-15281
Length = 1352
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 112 IPAFSQIKVSRRQSSHSKPASQPQQDH-RSRLTALPDPTACTYTASSRSIQAQSR 273
+PA +S +S S S+P+Q+H R+ + P AC+ T + + ++++
Sbjct: 809 VPAVYAQNISTERSVESSHLSRPEQNHSRANMEVKPGINACSATPAGGEVVSEAK 863
>01_06_0950 -
33265653-33265802,33265905-33265961,33266046-33266111,
33266252-33266317,33266752-33267217,33267313-33267566
Length = 352
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 142 RRQSSHSKPASQPQQDHRSRLTALPDPTACTYTASSRSI 258
++ S +K A QP+ D RSR L P A TYT +S ++
Sbjct: 302 QKGSESTKDAEQPKPDLRSRGLCLV-PVASTYTVASETV 339
>08_01_0003 +
30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +2
Query: 251 AAFKLSLDSPQTSSSTGDNHAAFKLSFDSPQTSSSTGTCKLISARTTITKYDTTSSLGGE 430
+A K + + S G + + + SP G +++ R+T + DT++SLG +
Sbjct: 559 SAMKFGVAREEKPKSIGRSPVEHEPDYTSPNQDKMHGRLQIMGKRSTTSSVDTSASLGNK 618
>07_01_0917 +
7735696-7735896,7735907-7736404,7736481-7736813,
7736991-7737314,7737367-7737836,7738165-7738447,
7738527-7738640
Length = 740
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/146 (17%), Positives = 64/146 (43%), Gaps = 1/146 (0%)
Frame = +1
Query: 133 KVSRRQSSHSKPASQPQQDHRSRLTALPDPTACTYTASSRSIQAQSRLTADFEQHWRQSR 312
K+SR++ S S ++ P Q+H + PDP + ++ + + A + R
Sbjct: 104 KISRQRWSRSTSSTPPSQNHLGNTHSSPDPCGMSSMPPNQRKSLRKKSQAYRDLQARNLH 163
Query: 313 SIQAQFRLTANFEQHWHLQANLSTD-NDN*I*HDLQSRRGVMWRVAIIQRKIIDRCLNLA 489
+ R A + W + + + N + D+ +R W A +++ L+
Sbjct: 164 PHRLGTRGYAGKQAEWDKEDEAAAESNTPQVLADIPVQRARNWARARVKKNSDG---TLS 220
Query: 490 YDIFKIKRIYTSSEQQHSDRRSTEQI 567
+ I + + +Y + +++R++++++
Sbjct: 221 FPIPEDQAVYQKIVELNAERQASQEV 246
>02_05_0311 +
27782110-27782326,27784121-27784268,27784394-27784478,
27784555-27784650,27785666-27785731,27785900-27785998,
27786145-27786258,27786468-27786578,27786672-27786734,
27786816-27786908,27787960-27788073,27788440-27788505,
27788782-27788994,27789086-27789116,27789459-27791587
Length = 1214
Score = 29.5 bits (63), Expect = 2.6
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Frame = +1
Query: 97 TSATTIPAFSQIKVSRRQSSHSKPASQPQQDHRSRLTALPDPTACTYTASSRSIQAQSRL 276
T T P+ SQ + S S P+S P R T P P + A+ R + L
Sbjct: 495 TILTYTPSISQFSLQAPMLSLSTPSSPPPPLPPRRATTAPTPVSLLRGAADR---RDAPL 551
Query: 277 TADFEQHWRQSRSIQAQFRLTA-NFEQHWHLQANLSTD 387
T+ +S ++ LTA N H +LQ L +D
Sbjct: 552 TSALHAALLKSGALDRTQPLTASNSLLHAYLQCGLLSD 589
>04_04_1342 +
32775582-32775796,32776589-32776794,32777356-32777492,
32778758-32778860,32778961-32779079,32779282-32779346,
32779426-32779642,32779713-32779934
Length = 427
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 202 VGCDGPVEAAMLACCGTTVDDLLLSA 125
V GP AA L CC +TVDD ++SA
Sbjct: 38 VALAGPA-AAQLRCCASTVDDGVVSA 62
>12_01_0183 -
1350451-1350477,1350887-1350969,1350977-1352696,
1354258-1354428,1355892-1355939
Length = 682
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 158 WDDCRRLTFICENAGIVVAE 99
WD R TFICE AG V+ E
Sbjct: 520 WDPIRAGTFICEYAGEVIDE 539
>11_01_0183 - 1440460-1440467,1440832-1440957,1440965-1442858
Length = 675
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 158 WDDCRRLTFICENAGIVVAE 99
WD R TFICE AG V+ E
Sbjct: 505 WDPIRAGTFICEYAGEVIDE 524
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,581,095
Number of Sequences: 37544
Number of extensions: 365424
Number of successful extensions: 1366
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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