Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0270
(672 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47203| Best HMM Match : SASP_gamma (HMM E-Value=5.1) 35 0.052
SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.091
SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_19775| Best HMM Match : Arm (HMM E-Value=0.27) 30 2.0
SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21) 29 2.6
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37) 29 3.4
SB_47133| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_8286| Best HMM Match : AT_hook (HMM E-Value=0.98) 29 3.4
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54) 29 4.5
SB_2507| Best HMM Match : DUF1168 (HMM E-Value=1.6) 29 4.5
SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_46623| Best HMM Match : LEA_2 (HMM E-Value=9.9) 28 6.0
SB_25158| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_12811| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 28 7.9
SB_41762| Best HMM Match : Tom22 (HMM E-Value=5.3) 28 7.9
SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5) 28 7.9
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3) 28 7.9
SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17) 28 7.9
SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5) 28 7.9
SB_54171| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8) 28 7.9
SB_32624| Best HMM Match : rve (HMM E-Value=0.00042) 28 7.9
SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18) 28 7.9
SB_23053| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068) 28 7.9
SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_1704| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_47203| Best HMM Match : SASP_gamma (HMM E-Value=5.1)
Length = 225
Score = 35.1 bits (77), Expect = 0.052
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Frame = +1
Query: 124 SQIKVSRRQSSHSKP-------ASQPQQDHRSRLTALPDPTACTYTASSRSIQAQSRL 276
SQ+++ +QS+ +KP A + QQ ++ TAL PT C Y A+ +Q+Q RL
Sbjct: 95 SQLRLQSQQSALTKPTALTKPTALKSQQSALTKPTALTKPTKCAYKANKVRLQSQLRL 152
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 91 SRTSATTIPAFSQIKVSRRQSSHSKPASQPQQDHRSRLTALPDPTACTYTASSRSIQA-Q 267
++ +A T P K ++ + S+ Q QQ ++ TAL PT C Y A+ +Q+ Q
Sbjct: 126 TKPTALTKPTKCAYKANKVRLQ-SQLRLQSQQSALTKPTALTKPTKCAYKANKVRLQSQQ 184
Query: 268 SRLT 279
S LT
Sbjct: 185 SALT 188
>SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 755
Score = 34.3 bits (75), Expect = 0.091
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +2
Query: 182 NRTIAADSPRFLTLRHAPTLPHRAAF-KLSLDSPQTSSS--TGDNHAAFKLSFDSPQTSS 352
N AA + RF T++ + RA K + SP +SSS TG + + ++
Sbjct: 254 NFFFAAKTTRFSTVKTSTKTSTRAGLTKAATTSPNSSSSLSTGKARTTEATTTGTTAATA 313
Query: 353 STGTCKLISARTTITKYDTTSS 418
+TGT + +S+++ I+ TTS+
Sbjct: 314 TTGTTEALSSQSVISNASTTST 335
>SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 529
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 160 SKPASQPQQDHRSRLTALPDPTACTYTASSRSI--QAQSRLTADFEQHWR 303
SKP S ++++R + L P C Y SR Q +S+ D ++HW+
Sbjct: 351 SKPISILERENRISVQVLIKPFRCAYRDDSRHFCYQGRSKDDGDEKKHWK 400
>SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2147
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +1
Query: 85 SASRTSATTIPAFSQIKVSRRQSSHSKPASQPQQDHRSRLTALPDPTACTYTASSRSIQA 264
S+ TSAT P SQ+ ++ S+ S Q+ S++T++ ++ T S+
Sbjct: 1141 SSQVTSATQEPPSSQVTSVTQEPRSSQVTSATQESRSSQVTSVTQESSSTQVTSATQESR 1200
Query: 265 QSRLTA 282
S++T+
Sbjct: 1201 SSQVTS 1206
>SB_19775| Best HMM Match : Arm (HMM E-Value=0.27)
Length = 607
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/86 (27%), Positives = 41/86 (47%)
Frame = +1
Query: 82 ISASRTSATTIPAFSQIKVSRRQSSHSKPASQPQQDHRSRLTALPDPTACTYTASSRSIQ 261
I + R S T++ + +++ R + KPAS Q+D S + +PD T +S +S
Sbjct: 100 IPSKRKSQTSVSSEFKVEEKRFVRNRLKPASSRQED--SAKSIVPDNNKSTTVSSCKSTT 157
Query: 262 AQSRLTADFEQHWRQSRSIQAQFRLT 339
A + T+ H S+S A + T
Sbjct: 158 AVNSRTS---THSAGSKSSSAAYSRT 180
>SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
Length = 666
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 221 LRHAPTLPHRAAFKLSLDSPQTSSSTGDNHA 313
L HAPT H+ A K + + P S G HA
Sbjct: 11 LAHAPTPNHQVAVKTAWEMPSRLGSAGKRHA 41
>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
Length = 1188
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 156 PQQASIAASTGPSQPTHRAS*P 221
PQ AS+ S G SQPTH + P
Sbjct: 548 PQHASVGTSMGQSQPTHAPAGP 569
>SB_47133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +2
Query: 233 PTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFDSPQTSSSTGTCKLISARTTITKYDTT 412
PT H+ S+ SP +S+ST H S +P T++ T + + +TT T
Sbjct: 43 PTTQHQVT-TTSVSSPTSSTST-TQHQVTTTSVSTPSTTTPPRTTSISTTKTTRVTTSTP 100
Query: 413 SSL 421
S++
Sbjct: 101 SAV 103
>SB_8286| Best HMM Match : AT_hook (HMM E-Value=0.98)
Length = 506
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 154 SHSKPASQPQQDHRSRLTALPDPTACTYTASSRSIQAQSRL 276
+ S+P S PQQ + + P P+ACT + + + +L
Sbjct: 179 ARSRPKSTPQQSQTLQCSPSPGPSACTLSVDRQLTERVEKL 219
>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
Length = 240
Score = 28.7 bits (61), Expect = 4.5
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Frame = +2
Query: 56 EQSQPSD*SSAHQELRLPQSPHSRR*K*VVDSRPTASQHRSLNRTIAAD---SPRFLTLR 226
+Q++P D + S + + + SR T S+ SL R++ SP+ + ++
Sbjct: 54 QQNKPEDKQQTSPKTSRKTSKKTSQKTSLNASRKT-SRRTSLKRSLKTSPKTSPKTMRMK 112
Query: 227 HAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFDSPQTSSST 358
T P + SP+TSS T + SP+TSS T
Sbjct: 113 SLKTSPKTSPEIGPRTSPKTSSKTSPKTSPKSSPKTSPKTSSKT 156
>SB_2507| Best HMM Match : DUF1168 (HMM E-Value=1.6)
Length = 305
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +2
Query: 65 QPSD*SSAHQELRLPQSPHSRR*K*VVDSRPTASQHRSLNRTIAADSPRFLTLRHA 232
Q SD S H++ LP +PH +R K VVD+ T + H+ ++ I ++ + R A
Sbjct: 120 QDSDFSVVHEK-ELPPNPHEQRVKHVVDT--TQAYHQDNDKEIDEENEQDHNTRQA 172
>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +2
Query: 65 QPSD*SSAHQELRLPQSPHSRR*K*VVDSRPTASQHRSLNRTIAADSPRFLTLRHA 232
Q SD S H++ LP +PH +R K VVD+ T + H+ ++ I ++ + R A
Sbjct: 80 QDSDFSVVHEK-ELPPNPHEQRVKHVVDT--TQAYHQDNDKEIDEENEQDHNTRQA 132
>SB_46623| Best HMM Match : LEA_2 (HMM E-Value=9.9)
Length = 196
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = -1
Query: 429 SPPRLEVVSYLVIVVRAEISLQVPVLLEVCGESKLSLNAA*LSPVLLEV 283
SP L+V L +++ E S+++PVLLE+ S + L+ + PVLLE+
Sbjct: 141 SPVLLDVSVKLPVLL--ESSVELPVLLELSVGSPVLLDVSVKLPVLLEL 187
>SB_25158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 258 SSSVSTHRRLRAALATITQHSSSVSTHRKLR 350
SSS ST+ ++ A +T+ SSS STHR++R
Sbjct: 449 SSSKSTNAQVTAG-STVRDSSSSGSTHRRIR 478
>SB_12811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1254
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Frame = +1
Query: 121 FSQIKVSR-RQSSHSKPASQPQQDHRSRLTALP--DPTACTYTASSRSIQAQ---SRLTA 282
FS + R SH +P +P +D +R L P C + ++ I+ + +
Sbjct: 970 FSSTYIHRDSDDSHEQPF-RPHKDLLARCCLLNRLTPVVCKLSPGTQDIERSYIFALSSD 1028
Query: 283 DFEQHWRQSRSIQAQFRLTANFEQHW 360
DF + W S S +LTA+ + W
Sbjct: 1029 DFSEFWLSSDSSPKNVKLTAHVGKRW 1054
>SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 1163
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 471 QMPESRLRHFQDKAHIYKFRTTTFGPSVHRA 563
++P SRLR+ ++K YKFR + H+A
Sbjct: 719 EIPNSRLRNLKEKTLRYKFRMVHIPGARHKA 749
>SB_41762| Best HMM Match : Tom22 (HMM E-Value=5.3)
Length = 568
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 471 QMPESRLRHFQDKAHIYKFRTTTFGPSVHRA 563
++P SRLR+ ++K YKFR + H+A
Sbjct: 166 EIPNSRLRNLKEKTLRYKFRMVHIPGARHKA 196
>SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5)
Length = 325
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 471 QMPESRLRHFQDKAHIYKFRTTTFGPSVHRA 563
++P SRLR+ ++K YKFR + H+A
Sbjct: 208 EIPNSRLRNLKEKTLRYKFRMVHIPGARHKA 238
>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
Length = 1353
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/78 (23%), Positives = 31/78 (39%)
Frame = +2
Query: 167 QHRSLNRTIAADSPRFLTLRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFDSPQT 346
Q + ++ +A + + R + P +A+ K PQ ++ HA+ K PQ
Sbjct: 848 QDKPQDKQVARQARPRQSSRKSKARPRQASRKTKTSKPQHKQASRPRHASCKTMASKPQD 907
Query: 347 SSSTGTCKLISARTTITK 400
T +R T TK
Sbjct: 908 QDKQSTRPGQKSRKTRTK 925
>SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1229
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 471 QMPESRLRHFQDKAHIYKFRTTTFGPSVHRA 563
++P SRLR+ ++K YKFR + H+A
Sbjct: 653 EIPNSRLRNLKEKTLRYKFRMVHIPGARHKA 683
>SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5)
Length = 398
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 471 QMPESRLRHFQDKAHIYKFRTTTFGPSVHRA 563
++P SRLR+ ++K YKFR + H+A
Sbjct: 146 EIPNSRLRNLKEKTLRYKFRMVHIPGARHKA 176
>SB_54171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 471 QMPESRLRHFQDKAHIYKFRTTTFGPSVHRA 563
++P SRLR+ ++K YKFR + H+A
Sbjct: 25 EIPNSRLRNLKEKTLRYKFRMVHIPGARHKA 55
>SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8)
Length = 420
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 471 QMPESRLRHFQDKAHIYKFRTTTFGPSVHRA 563
++P SRLR+ ++K YKFR + H+A
Sbjct: 246 EIPNSRLRNLKEKTLRYKFRMVHIPGARHKA 276
>SB_32624| Best HMM Match : rve (HMM E-Value=0.00042)
Length = 415
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 471 QMPESRLRHFQDKAHIYKFRTTTFGPSVHRA 563
++P SRLR+ ++K YKFR + H+A
Sbjct: 67 EIPNSRLRNLKEKTLRYKFRMVHIPGARHKA 97
>SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18)
Length = 838
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 471 QMPESRLRHFQDKAHIYKFRTTTFGPSVHRA 563
++P SRLR+ ++K YKFR + H+A
Sbjct: 260 EIPNSRLRNLKEKTLRYKFRMVHIPGARHKA 290
>SB_23053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 149 SRPTASQHR-SLNRTIAADSPRFLTLRHAPTLPHRAAFKLSLDSPQ-TSSSTGDNH 310
S+ TA H L++ A D P ++ R AP PH + + + D P S T +H
Sbjct: 160 SKRTAPDHPLGLSKRTAPDHPLGVSKRTAPDHPHGVSKRTAPDHPHGVSKHTAPDH 215
>SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068)
Length = 1502
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 471 QMPESRLRHFQDKAHIYKFRTTTFGPSVHRA 563
++P SRLR+ ++K YKFR + H+A
Sbjct: 973 EIPNSRLRNLKEKTLRYKFRMVHIPGARHKA 1003
>SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1060
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 234 GACRRVRKRGESAAMVLLRLRCWLAVGRLSTTYFYLRECGDCGSR 100
G + +K G + L+R R W+ GR+ T L+ C C R
Sbjct: 86 GGVQDTKKSGREHVLGLIRQRFWIIKGRV-TVLRVLKSCFSCRRR 129
>SB_1704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 471 QMPESRLRHFQDKAHIYKFRTTTFGPSVHRA 563
++P SRLR+ ++K YKFR + H+A
Sbjct: 146 EIPNSRLRNLKEKTLRYKFRMVHIPGARHKA 176
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,330,252
Number of Sequences: 59808
Number of extensions: 426784
Number of successful extensions: 1713
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1616
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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