Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0270
         (672 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    30   0.058
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    27   0.71 
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    25   2.2  
AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    25   2.2  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    24   3.8  
AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.           24   3.8  
AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.           24   3.8  
Z22930-3|CAA80515.1|  275|Anopheles gambiae trypsin protein.           24   5.0  
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    23   6.6  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    23   6.6  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    23   8.8  

>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 30.3 bits (65), Expect = 0.058
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +2

Query: 149 SRPTASQHRSLNRTIAADSPRFLTLRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLS 328
           S P A+++R   RT A  +    T R  PT  HR A + S      ++S+   H     +
Sbjct: 296 SSPIATRNRFTTRTPATSTEHRYTTR-TPTTTHRLAARTSTPPDPETTSSQQCHPPVNDT 354

Query: 329 FDSPQTSSSTG 361
            ++P ++  +G
Sbjct: 355 LEAPNSTLVSG 365



 Score = 23.4 bits (48), Expect = 6.6
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -2

Query: 197 LRWSC*GCDAGLLWDDCRRLTFICENAGIVVAEVLDALMINQKVAIVPSQVTS 39
           L WSC GC   L    CR +  I    G   A       I + V  + ++V S
Sbjct: 60  LHWSCIGCTNMLKNPRCRSVKEIGAQVGFQAALNSAVAAIGKLVEPIVAEVRS 112


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 26.6 bits (56), Expect = 0.71
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 247  SRSIQAQSRLTADFEQHWRQSRSIQAQFRLTANFEQHWHLQA 372
            SR  +A  R+TA  +Q W   R+  A      +FE+   L+A
Sbjct: 994  SRICEAAKRITASLQQAWDDERAALAAHGNEQHFEEVADLEA 1035


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 174 AASTGPSQPTHRAS*P 221
           AA+TGP  PTHR   P
Sbjct: 913 AAATGPPPPTHRLEQP 928


>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
 Frame = +2

Query: 221 LRHAPTL--PHRAAFKLSLDSPQTSSSTGDNHAAFK-----LSFDSPQTSSS 355
           L  APT+   HRA  KL    P  SSS+G  +++ K     L + +PQ S+S
Sbjct: 51  LAPAPTVLGGHRANAKLPGAGPIVSSSSGSGNSSKKYAYCGLPYATPQQSAS 102



 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 130 IKVSRRQSSHSKPASQPQQDHRSRLTALPDPT 225
           I   ++Q  H     QPQQ H+ +  + P  T
Sbjct: 302 ILAQQQQQQHHHHQHQPQQQHQQQYHSHPHHT 333


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 568  SPARWKIFPLSYIPTIQN 621
            SP+RWK F  + +  IQN
Sbjct: 1135 SPSRWKTFVANRVSQIQN 1152


>AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +1

Query: 97  TSATTIPAFSQIKVSRRQSSHSKPASQPQQDHRSRLTALPDPTACTYTASSRSIQAQSRL 276
           T  TT P ++        ++ +  + QP     +  T   DPTA T T +S +    S L
Sbjct: 150 TITTTTPVWTDPTTWSAPTTTTTWSDQPPPPTTTTTTVWTDPTATTTTPASTTTTTWSDL 209


>AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +1

Query: 97  TSATTIPAFSQIKVSRRQSSHSKPASQPQQDHRSRLTALPDPTACTYTASSRSIQAQSRL 276
           T  TT P ++        ++ +  + QP     +  T   DPTA T T +S +    S L
Sbjct: 150 TITTTTPVWTDPTTWSAPTTTTTWSDQPPPPTTTTTTVWTDPTATTTTPASTTTTTWSDL 209


>Z22930-3|CAA80515.1|  275|Anopheles gambiae trypsin protein.
          Length = 275

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = +2

Query: 161 ASQHRSLNRTIAADSPRFLTLRHAPTLPHRAAFKLSLDSPQT 286
           A  H S  R +    PRFL   H     HR      +D  +T
Sbjct: 19  AQAHASHQRRVPYPLPRFLPRPHHTVSNHRIVGGFEIDVAET 60


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +3

Query: 150 VVPQQASIAASTGPSQPTHRAS*PYGMHLHCLIAQHSSSVSTHRRLRAALATITQHSSSV 329
           V+ QQ + ++ST  S  + + S      LH     HSS+  + RR +   ++ +  SSSV
Sbjct: 3   VISQQPTASSST-TSSSSSKPSPQQQQQLHSADVPHSSTSQSSRRPQH--SSTSASSSSV 59

Query: 330 ST 335
            T
Sbjct: 60  PT 61


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +3

Query: 150 VVPQQASIAASTGPSQPTHRAS*PYGMHLHCLIAQHSSSVSTHRRLRAALATITQHSSSV 329
           V+ QQ + ++ST  S  + + S      LH     HSS+  + RR +   ++ +  SSSV
Sbjct: 3   VISQQPTASSST-TSSSSSKPSPQQQQQLHSADVPHSSTSQSSRRPQH--SSTSASSSSV 59

Query: 330 ST 335
            T
Sbjct: 60  PT 61


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = +1

Query: 493 DIFKIKRIYTSSEQQHSDRRSTEQISPARWKIFP 594
           D + +  +    E +HS    TE      WK+ P
Sbjct: 655 DSYGVHELNAQQEIRHSHINVTEHFKGNNWKVHP 688


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 677,225
Number of Sequences: 2352
Number of extensions: 14061
Number of successful extensions: 55
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67322955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)