Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0270
         (672 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX537787-1|CAD97843.1|  895|Homo sapiens hypothetical protein pr...    33   1.2  
AY365125-1|AAR13073.1|  895|Homo sapiens cullin 4B protein.            33   1.2  
AK124538-1|BAC85878.1|  256|Homo sapiens protein ( Homo sapiens ...    32   2.1  
BT007262-1|AAP35926.1|  686|Homo sapiens cleft lip and palate as...    30   8.7  
BC036216-1|AAH36216.1|  913|Homo sapiens cullin 4B protein.            30   8.7  
BC004865-1|AAH04865.1|  686|Homo sapiens CLPTM1 protein protein.       30   8.7  
AL451005-1|CAI41370.1|  913|Homo sapiens cullin 4B protein.            30   8.7  

>BX537787-1|CAD97843.1|  895|Homo sapiens hypothetical protein
           protein.
          Length = 895

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 24/68 (35%), Positives = 31/68 (45%)
 Frame = +2

Query: 155 PTASQHRSLNRTIAADSPRFLTLRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFD 334
           PT     S +   AA   R  T  +  T P  +A K  L+S  +SSS   N    +  FD
Sbjct: 3   PTGFSSPSPSAAAAAQEVRSATDGNTSTTPPTSAKKRKLNSSSSSSSNSSNE---REDFD 59

Query: 335 SPQTSSST 358
           S  +SSST
Sbjct: 60  STSSSSST 67


>AY365125-1|AAR13073.1|  895|Homo sapiens cullin 4B protein.
          Length = 895

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 24/68 (35%), Positives = 31/68 (45%)
 Frame = +2

Query: 155 PTASQHRSLNRTIAADSPRFLTLRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFD 334
           PT     S +   AA   R  T  +  T P  +A K  L+S  +SSS   N    +  FD
Sbjct: 3   PTGFSSPSPSAAAAAQEVRSATDGNTSTTPPTSAKKRKLNSSSSSSSNSSNE---REDFD 59

Query: 335 SPQTSSST 358
           S  +SSST
Sbjct: 60  STSSSSST 67


>AK124538-1|BAC85878.1|  256|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42547 fis, clone BRACE3004880. ).
          Length = 256

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -1

Query: 357 VLLEVCGESKLSLNAA*LSPVLLEVCGESRLSLNAAR*GSV 235
           V L  CG S+++L+A  LS +    CG SR++L+A    S+
Sbjct: 151 VTLSACGLSRVTLSACGLSSMTPSACGLSRVTLSACHLSSM 191


>BT007262-1|AAP35926.1|  686|Homo sapiens cleft lip and palate
           associated transmembrane protein 1 protein.
          Length = 686

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 141 SSTVVPQQASIAASTGPSQPTHRAS*PYGMHLHCLIAQHSSSVSTHRRLRA 293
           ++T   ++AS +  T P+Q    AS P G+ +  L    S  VS+H  L A
Sbjct: 629 TTTATREEASTSLPTKPTQGASSASEPQGLFVEALSVPLSLCVSSHLALPA 679


>BC036216-1|AAH36216.1|  913|Homo sapiens cullin 4B protein.
          Length = 913

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = +2

Query: 194 AADSPRFLTLRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFDSPQTSSST 358
           AA   R  T  +  T P  +A K  L+S  +SSS   N    +  FDS  +SSST
Sbjct: 34  AAQEVRSATDGNTSTTPPTSAKKRKLNSSSSSSSNSSNE---REDFDSTSSSSST 85


>BC004865-1|AAH04865.1|  686|Homo sapiens CLPTM1 protein protein.
          Length = 686

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 141 SSTVVPQQASIAASTGPSQPTHRAS*PYGMHLHCLIAQHSSSVSTHRRLRA 293
           ++T   ++AS +  T P+Q    AS P G+ +  L    S  VS+H  L A
Sbjct: 629 TTTATREEASTSLPTKPTQGASSASEPQGLFVEALSVPLSLCVSSHLALPA 679


>AL451005-1|CAI41370.1|  913|Homo sapiens cullin 4B protein.
          Length = 913

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = +2

Query: 194 AADSPRFLTLRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFDSPQTSSST 358
           AA   R  T  +  T P  +A K  L+S  +SSS   N    +  FDS  +SSST
Sbjct: 34  AAQEVRSATDGNTSTTPPTSAKKRKLNSSSSSSSNSSNE---REDFDSTSSSSST 85


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,413,926
Number of Sequences: 237096
Number of extensions: 1936487
Number of successful extensions: 5437
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5396
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)