Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0270
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.6  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   4.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 217 DPTACTYTASSRSIQAQSRLTADFEQHWRQSRSIQAQFRLTANFEQHWH 363
           DP A T   +S     + R+      H+  S + Q+  RLT+  E H H
Sbjct: 52  DPGAITGLVASLDGALKLRIRCSDVHHFESSFNAQSWQRLTSLHELHVH 100


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 142 RRQSSHSKPASQPQQDHRSRLTALPDPTAC 231
           RR+++    +S   + HR+ L+  P P  C
Sbjct: 539 RRRANSGSTSSGDDELHRASLSKTPQPPQC 568



 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +1

Query: 205 TALPDPTACTYTASSRSIQAQSRLTADFEQHW 300
           TA P   AC    + + +  Q  L  DF + +
Sbjct: 211 TACPPTLACPLNPNPQPLTGQQELLQDFSKRF 242


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 441 PPHHSPPRLEVVSYLVIVVRAEISL-QVP 358
           P  H P  +E VSYL  + R + ++ Q+P
Sbjct: 710 PQSHQPGAMEQVSYLTSLERTQPTMSQMP 738


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 527 PNNNIRTVGPPSKYHPLGGRSSLC 598
           P+   + V P    HPL G   LC
Sbjct: 87  PSGQNKAVAPYPPNHPLSGSKHLC 110


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 527 PNNNIRTVGPPSKYHPLGGRSSLC 598
           P+   + V P    HPL G   LC
Sbjct: 87  PSGQNKAVAPYPPNHPLSGSKHLC 110


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 351 LEVCGESKLSLNAA*LSPVLLEVCGESRLS 262
           L  CG + ++     +SP+L  VC ++RL+
Sbjct: 45  LPFCGPNVINPFFCDMSPLLSLVCADTRLN 74


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 111 NPRILADKSKSSTVVPQQASIAASTGPSQ 197
           NPRI +  S S++  P     AA+  PS+
Sbjct: 514 NPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 139 SRRQSSHSKPASQPQQDH 192
           S R  S S   SQP QDH
Sbjct: 40  SSRSPSPSLLTSQPHQDH 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,448
Number of Sequences: 438
Number of extensions: 3756
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)