Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0270
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g34960.1 68418.m04125 hypothetical protein includes At5g34960...    32   0.40 
At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identica...    31   0.70 
At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identica...    31   0.70 
At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identica...    31   0.70 
At4g36290.1 68417.m05160 ATP-binding region, ATPase-like domain-...    31   0.92 
At2g22720.3 68415.m02692 expressed protein                             30   1.2  
At2g22720.2 68415.m02691 expressed protein                             30   1.2  
At2g22720.1 68415.m02693 expressed protein                             30   1.2  
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ...    29   2.1  
At5g49660.1 68418.m06147 leucine-rich repeat transmembrane prote...    29   3.7  
At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa...    28   4.9  
At1g07530.1 68414.m00806 scarecrow-like transcription factor 14 ...    28   4.9  
At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4...    28   6.5  
At3g12540.1 68416.m01560 expressed protein contains Pfam profile...    27   8.6  

>At5g34960.1 68418.m04125 hypothetical protein includes At5g34960,
           At2g14450, At1g35920
          Length = 1033

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -2

Query: 173 DAGLLWDDCRRLTFICENAGIVVAEVLDALMINQKVAIVPSQVTSCREIYDERKIFH 3
           +A  LWD C+ L     N G+ + ++ + L+I      + S +T+  EIY + KI H
Sbjct: 755 NASYLWDHCKVLKINEPNDGVAIIDIPEDLLITNTDKPIES-ITN--EIYGDPKILH 808


>At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1150

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +1

Query: 127 QIKVSRRQSSHSKPASQPQQDHRSRLTALPDPTACTYTASSRSIQAQSRLTADFEQHWRQ 306
           Q++V + Q  + + A+Q  Q  ++    L         ASS      S L   F+Q  +Q
Sbjct: 607 QLQVPQNQLYNGQQAAQQHQSQQASTHHLQPQLVSGSMASSVITPPSSSLNQSFQQQQQQ 666

Query: 307 SRSI-QAQFRLTANFEQHWHLQANLSTDN 390
           S+ + QA   L A+  Q   ++ + S+ N
Sbjct: 667 SKQLQQAHHHLGASTSQSSVIETSKSSSN 695


>At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1164

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +1

Query: 127 QIKVSRRQSSHSKPASQPQQDHRSRLTALPDPTACTYTASSRSIQAQSRLTADFEQHWRQ 306
           Q++V + Q  + + A+Q  Q  ++    L         ASS      S L   F+Q  +Q
Sbjct: 606 QLQVPQNQLYNGQQAAQQHQSQQASTHHLQPQLVSGSMASSVITPPSSSLNQSFQQQQQQ 665

Query: 307 SRSI-QAQFRLTANFEQHWHLQANLSTDN 390
           S+ + QA   L A+  Q   ++ + S+ N
Sbjct: 666 SKQLQQAHHHLGASTSQSSVIETSKSSSN 694


>At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1165

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +1

Query: 127 QIKVSRRQSSHSKPASQPQQDHRSRLTALPDPTACTYTASSRSIQAQSRLTADFEQHWRQ 306
           Q++V + Q  + + A+Q  Q  ++    L         ASS      S L   F+Q  +Q
Sbjct: 607 QLQVPQNQLYNGQQAAQQHQSQQASTHHLQPQLVSGSMASSVITPPSSSLNQSFQQQQQQ 666

Query: 307 SRSI-QAQFRLTANFEQHWHLQANLSTDN 390
           S+ + QA   L A+  Q   ++ + S+ N
Sbjct: 667 SKQLQQAHHHLGASTSQSSVIETSKSSSN 695


>At4g36290.1 68417.m05160 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Mus musculus] GI:5410255; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 635

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 78  NHQRIKNFGYHNPRILADKSKSSTVVPQQASIAASTGPSQ-PTHRAS 215
           NH  I  FGY   +I ADKSK  TV+P Q     +  PS  P+ R S
Sbjct: 472 NHCHI--FGYQTAQIPADKSK-RTVIPDQPPTVNTYNPSPLPSDRIS 515


>At2g22720.3 68415.m02692 expressed protein
          Length = 569

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +2

Query: 80  SSAHQELRLPQSPHSRR*K*VVDSRPTASQHRSLNRTIAADSPRFLTLRHAPTLPHRAAF 259
           S+    L+ PQ P S R     D R    + R ++R +A  +PR +  + APT  H+   
Sbjct: 412 SAGKSSLQSPQRPSSSRPM-SSDPRQRVVEQRKVSRDMA--TPRMIPKQSAPTSKHQMMS 468

Query: 260 KLSLDSP 280
           K +L  P
Sbjct: 469 KPALKRP 475


>At2g22720.2 68415.m02691 expressed protein
          Length = 672

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +2

Query: 80  SSAHQELRLPQSPHSRR*K*VVDSRPTASQHRSLNRTIAADSPRFLTLRHAPTLPHRAAF 259
           S+    L+ PQ P S R     D R    + R ++R +A  +PR +  + APT  H+   
Sbjct: 515 SAGKSSLQSPQRPSSSRPM-SSDPRQRVVEQRKVSRDMA--TPRMIPKQSAPTSKHQMMS 571

Query: 260 KLSLDSP 280
           K +L  P
Sbjct: 572 KPALKRP 578


>At2g22720.1 68415.m02693 expressed protein
          Length = 340

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +2

Query: 80  SSAHQELRLPQSPHSRR*K*VVDSRPTASQHRSLNRTIAADSPRFLTLRHAPTLPHRAAF 259
           S+    L+ PQ P S R     D R    + R ++R +A  +PR +  + APT  H+   
Sbjct: 183 SAGKSSLQSPQRPSSSRPM-SSDPRQRVVEQRKVSRDMA--TPRMIPKQSAPTSKHQMMS 239

Query: 260 KLSLDSP 280
           K +L  P
Sbjct: 240 KPALKRP 246


>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 674

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +3

Query: 255 HSSSVSTHRRLRAALATITQHSSSVSTHRKLR 350
           +SS+ S+ +RLR+ ++T TQ+SS     RK+R
Sbjct: 235 NSSTESSLKRLRSVVSTSTQNSSDPDPARKIR 266


>At5g49660.1 68418.m06147 leucine-rich repeat transmembrane protein
           kinase, putative contains leucine rich repeat (LRR)
           domains, Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 966

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 474 SVNYLALYDGYPPHHSPPRLEVVSYLVIVVRAEISLQVPVLLEVCGESKL 325
           ++  L+LYD Y     PP L   S ++ +  +E  L  P+   VC   KL
Sbjct: 317 TLKILSLYDNYLTGELPPNLGSSSPMIALDVSENRLSGPLPAHVCKSGKL 366


>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 683

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 335 SPQTSSSTGTCKLISARTTITKYDTTSSLGG 427
           +P++ S TGT  L    +T T   TTSSL G
Sbjct: 46  TPRSDSGTGTYSLRCRTSTATAVSTTSSLPG 76


>At1g07530.1 68414.m00806 scarecrow-like transcription factor 14
           (SCL14) identical to GB:AAD24412 from [Arabidopsis
           thaliana] (Plant J. 18 (1), 111-119 (1999))
          Length = 769

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 278 PQTSSSTGDNHAAFKLSFDSPQTSSSTGTCKLISARTTITKYDTTSSLGG 427
           P +SS++  +H   +L+ DSP  S S G     ++ TT T  D+  S+ G
Sbjct: 128 PSSSSASSVDHPE-RLASDSPDGSCSGGAFSDYASTTTTTSSDSHWSVDG 176


>At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4)
           identical to AtMRP4 GI:2959767 from [Arabidopsis
           thaliana]
          Length = 1516

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 197 ADSPRFLTLRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAF 319
           ADS    T    PT PH ++ + S++SP  S    ++  +F
Sbjct: 876 ADSAAVATSPRTPTSPHASSPRTSMESPHLSDLNDEHIKSF 916


>At3g12540.1 68416.m01560 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 503

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 287 SSSTGDNHAAFKLSFDSPQTSSSTGTCKLISAR 385
           S S GD+H    +  +SP+T +S G+    S+R
Sbjct: 123 SQSYGDHHVVKDIQMNSPRTHASIGSTMEFSSR 155


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,716,174
Number of Sequences: 28952
Number of extensions: 277719
Number of successful extensions: 996
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)