Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0269
         (741 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.64 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.0  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   2.6  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   7.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -1

Query: 486 SSDLDTSIFEGKLMPSADFRSYDGWQNKRTRSFSQALSCSY 364
           SSDL+  I E   +P    R  D W  K      Q L C +
Sbjct: 443 SSDLNMLIKETMPLPRKLVRGQDVWLGKGAEQTRQILKCMW 483


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 271 KLIIKPTTLESKYGEDFVRQSLDLSERCTGTVG 369
           ++++ P  L   +GED + +   +S +CT + G
Sbjct: 598 QVMVPPQILPFDFGEDSINEGDGVSVQCTVSKG 630


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 195 WYPNFTSVYWYIELIFEKQLPFAYKTR 115
           ++  F  VY    LIF +Q+PF +  R
Sbjct: 169 FFKRFLPVYVSYLLIFVQQIPFCFFVR 195


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +3

Query: 396 WSSYFATHHNCENQHSASICLQIWT 470
           W+S        EN  S    +QIWT
Sbjct: 423 WTSTLTQKEYLENLPSDKYIIQIWT 447


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.139    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,511
Number of Sequences: 336
Number of extensions: 4452
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)