Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0269
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 32 0.099
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe... 29 0.70
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 29 0.92
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 28 1.2
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 2.1
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 27 2.8
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 3.7
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 27 3.7
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 27 3.7
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 26 4.9
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 6.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.5
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 8.6
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 25 8.6
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 25 8.6
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 31.9 bits (69), Expect = 0.099
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 193 PEVKFPGEPDFPFNVYLNDNAEVNDGKLIIKPTTLESK 306
PEV F PDFPFN+ L ++ + + + P TLE+K
Sbjct: 841 PEVPFLAFPDFPFNIKL----DLRESIIGLNPRTLEAK 874
>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 248
Score = 29.1 bits (62), Expect = 0.70
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 586 ASVKGNAEFSKKLYAGPVMTGSDPYRSFYLKENIGYESWDNDFHNY 723
AS G+A + Y P M GS P +S+ + ++SW ++H++
Sbjct: 174 ASFIGHASGAVMGYCTPFMLGSIPLKSWAQNVDPIFQSWVKNYHSF 219
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 28.7 bits (61), Expect = 0.92
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -2
Query: 359 PVHLSDRSKDCRTKSSPYFDSKVVGFMISFPSLTSALSFRYTLKGKSGSPGNFTSGT 189
P +++ K +SSPYFD +G ++ PS+ L G +F SGT
Sbjct: 245 PTYVTPMGKTAINESSPYFDGVYIG-SLTEPSIKERAESTDLLLIIGGLRSDFNSGT 300
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 622 LYAGPVMTGSDPYRSFYLKENIGYESWDNDFHNYTLK 732
L++ V TG D F+L EN+ ++D+D YTLK
Sbjct: 640 LFSNLVCTGEDANCLFHLLENVNVTAFDSD---YTLK 673
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -2
Query: 371 VPTVPVHLSDRSKDCRTKSSPYFDSKVVGFMISFPSLTSALSFRYTLKGKSGSPGNFTSG 192
V P H D +DC ++ +VG+M S+P TS + + K + NF S
Sbjct: 640 VTVEPSHFQD--EDCNESTNML---SLVGYMDSYPEATSNIQKMNSYHIKDSNKENFLST 694
Query: 191 TQI 183
T++
Sbjct: 695 TKV 697
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Frame = +1
Query: 505 WLYPEI--LLEPRDNIYGVRNY---ASGILKIASVKGNAEFSKKLYAGPVMTG--SDPYR 663
W Y E+ + PR+ Y R ++G+L ++ V N+E SK L G ++ +D ++
Sbjct: 289 WSYDELSRIGLPREFEYDCRTRVPSSTGLLVVSRVLRNSEVSKALEPGDILIAFKTDSHK 348
Query: 664 SFYL 675
S Y+
Sbjct: 349 STYI 352
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 229 FNVYLNDNAEVNDGKLIIKPTTLESKYGEDFVRQSLDLS 345
FN Y+ E N G +++ P K+GEDF+R+ + S
Sbjct: 20 FNGYVPP--EQNGGDIVV-PKDFYEKFGEDFIREQEESS 55
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 228 GKIRFTRKLYFWYPNFTSVYWYIELIFEKQLPFAY 124
G R+ RK+++ F S+ W + F+ LP+ Y
Sbjct: 376 GWYRYARKIHYTADFFQSLSWALITGFQSPLPYFY 410
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 19 PQSIPNQPPD-SLPAKPPSEGYPCELSLSTVSVPGFVCKGQLLFEDQ 156
P+++P +P SLP K P + + S + G CK ++ D+
Sbjct: 423 PEALPREPLSFSLPEKAPEKATNISIPESAPTTAGSTCKVKVRLGDE 469
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 4.9
Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 10/143 (6%)
Frame = +1
Query: 121 FVCKGQLLFEDQFNIPIH-------RGKIWVPEVKFPGEPDFPFNVYLNDNAEVNDGKLI 279
F+C G + E Q+ +P RGK + + D PF V + EV G+ I
Sbjct: 101 FLCLGTHIMEGQYIVPEELLDYAKKRGKNRIISIPNHSTVDIPFQVNFPKHVEVGPGRQI 160
Query: 280 IKPTTLESKYGEDFVRQSLD--LSERCTGTVGTAQCLREASGPLILPPII-TAKISTRHQ 450
++ + + QS D S R + + +S L P I+ +K +
Sbjct: 161 HSRVKVQYFAYANIIYQSADKLRSRRECQEINVLPSISPSSF-LDSPSIMCVSKQPDLKK 219
Query: 451 FAFKYGRVEIRAKMPKGDWLYPE 519
+ I +P+ DWL E
Sbjct: 220 DRQRKSATRITVSLPRTDWLAGE 242
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 1 GLNPESPQSIPNQPPDSLPAKPP 69
G P+ S P++P ++ P KPP
Sbjct: 374 GPKPKIKSSAPSKPAETAPVKPP 396
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 7 NPESPQSIPNQPPDSLPAKPPSEGY 81
NP P P P S P PP GY
Sbjct: 8 NPPPPPPPPGFEPPSQPPPPPPPGY 32
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 507 PISFWHFSSDLDTSIFEGKLMPSADFRSYDGW 412
P+S + F T+++E KL P+A F W
Sbjct: 533 PVSAFVFLELTITALYETKLSPAAAFEKLKSW 564
>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 613 SKKLYAGPVMTGSDPYRSFYLKENIGYESW 702
+++L+ P +G D + +FYL E I + +W
Sbjct: 143 TQELFEIPGTSGIDYFMAFYLNEVIYHRAW 172
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 25 SIPNQPPDSLPAKPPSEGYPCELSLSTVSVP 117
++ Q P LP+ PS+ E SLST S P
Sbjct: 561 AVTPQAPSPLPSSNPSQASLTEESLSTRSSP 591
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.139 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,262,788
Number of Sequences: 5004
Number of extensions: 73284
Number of successful extensions: 225
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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