Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0269
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0501 - 10999203-10999754,11000724-11001460,11001461-110018... 34 0.10
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 33 0.24
10_06_0083 + 10471648-10471806,10473261-10473343,10473384-104738... 30 1.7
01_06_0146 + 26969011-26969995,26970878-26970930 30 2.2
05_03_0107 - 8470386-8470559,8470694-8471737 29 2.9
03_01_0414 + 3183292-3183735,3184547-3184969,3185435-3185535,318... 29 2.9
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 5.1
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 29 5.1
07_03_1160 - 24430240-24431268 29 5.1
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886... 29 5.1
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376... 28 6.8
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 28 6.8
01_06_0347 + 28592552-28593502 28 6.8
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 28 9.0
06_03_0824 + 25105450-25105482,25105649-25106485,25106580-251067... 28 9.0
03_02_0225 + 6565337-6565369,6565564-6565734,6566113-6566400,656... 28 9.0
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 28 9.0
>02_02_0501 -
10999203-10999754,11000724-11001460,11001461-11001836,
11001917-11001946,11002718-11002912,11003604-11004149
Length = 811
Score = 34.3 bits (75), Expect = 0.10
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +1
Query: 448 QFAFKYGRVEIRAKMPKGDWLYPEILLEP-RDNIYGVRNYASGILKIASVKGNAEFSKKL 624
Q + GRV+ ++ +WL + L +P +YG +Y + + + FS +
Sbjct: 644 QLKYNIGRVDAEDQLAGAEWLIKKGLAKPGHIGLYG-WSYGGFLSAMCLARFPDTFSCAV 702
Query: 625 YAGPVMTGSDPYRSFYLKENIGYESWDNDFHNY 723
PV T D Y +FY ++ +G S D + Y
Sbjct: 703 SGAPV-TAWDGYDTFYTEKYMGLPSEQRDAYRY 734
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 33.1 bits (72), Expect = 0.24
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 10 PESPQSIPNQPPDSLPAKPPSEGYPCELSLSTVSVP-GFVCKGQLLF 147
P + IP PP++ PA PP P S+ST ++P +V + L++
Sbjct: 497 PPEDEWIPPPPPENEPAPPPPPEEPAVSSVSTETIPQSYVDQANLVY 543
>10_06_0083 +
10471648-10471806,10473261-10473343,10473384-10473810,
10475806-10475932,10476329-10476471,10476687-10476749,
10476833-10476898,10477047-10477085
Length = 368
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = -1
Query: 495 WHFSSDLDTSIFEGKLMPSADFRSYDGWQNKRTRSFSQALSCSYGSSASF*QIQRLSNKI 316
W+ SSDL + + + R + G+Q T+SFS+++SC S ASF R K+
Sbjct: 260 WN-SSDLASDDAQSPKPQRSRSRQHRGFQ---TKSFSRSMSCDSHSKASFSSSSRAHTKV 315
Query: 315 -FAIL*LQGSWFY 280
+ L + W Y
Sbjct: 316 DLSKLEMTALWRY 328
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 10 PESPQSIPNQPPDSLPAKPPSEGYP 84
P Q P PP SLP PP+ G P
Sbjct: 107 PAPDQPAPPSPPPSLPPSPPAPGSP 131
>05_03_0107 - 8470386-8470559,8470694-8471737
Length = 405
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 10 PESPQSIPNQPPDSLPAKPPSEGYPCELSLSTVSVPGFVCKGQLLFEDQ 156
P S S+ P PA + PC T+ G + KG+++ EDQ
Sbjct: 9 PPSTPSMVGNPDGGAPAAAADQSAPCATGGETLVGEGRLRKGKMVAEDQ 57
>03_01_0414 +
3183292-3183735,3184547-3184969,3185435-3185535,
3186178-3187439,3187625-3187665,3187777-3187845,
3187975-3188075,3188413-3188491,3188570-3188668,
3188757-3188825,3188918-3188967,3189211-3189387,
3189496-3189634
Length = 1017
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 22 QSIPNQ-PPDSLPAKPPSEGYPCELSLSTVS 111
Q +P Q PP PA PS G P LS+STVS
Sbjct: 26 QGLPQQTPPSPSPASSPSGGPPA-LSVSTVS 55
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 10 PESPQSIPNQPPDSLPAKPPSEGYPCELSLSTVSVP 117
P SP P PP LP+ PP + P L + +P
Sbjct: 1174 PLSPSLPPPPPPPPLPSGPPPQPAPPPLPIQPPPIP 1209
>07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 28.7 bits (61), Expect = 5.1
Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 1/145 (0%)
Frame = +1
Query: 262 NDGKLIIKPTTL-ESKYGEDFVRQSLDLSERCTGTVGTAQCLREASGPLILPPIITAKIS 438
+DG ++KP E +G ++ S ++ +VG L S P I P I +
Sbjct: 608 SDGSTLVKPGERNEPGFGSHPLQSSYTTDKKVPSSVG----LSSKSSPSISP--IKPSSA 661
Query: 439 TRHQFAFKYGRVEIRAKMPKGDWLYPEILLEPRDNIYGVRNYASGILKIASVKGNAEFSK 618
F+ G +E +G L E + +P D + V +++ A + SK
Sbjct: 662 GPSSTGFRTGNLEA-FPTSRGSPLPQESIDKPHDRTHAVVDHSKNFKLGAMFDTEQDLSK 720
Query: 619 KLYAGPVMTGSDPYRSFYLKENIGY 693
K Y+ MT Y++++ G+
Sbjct: 721 KFYSINDMTKELDTLLSYIEKDGGF 745
>07_03_1160 - 24430240-24431268
Length = 342
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 7 NPESPQSIPNQPPDSLPAKPPSEGYP 84
NP P SIPNQPP +P P P
Sbjct: 219 NPNGP-SIPNQPPQPIPNGPIKPDQP 243
>03_05_1153 +
30787574-30787608,30787982-30788089,30788651-30788689,
30789181-30789184,30789496-30789580,30789609-30790321
Length = 327
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 1 GLNPESPQSIPNQPPDSLPAKPPSEGYPC 87
G PE + PP +P PP + YPC
Sbjct: 281 GKAPEPAPAPAPPPPQYIPCYPPQQPYPC 309
>05_04_0124 + 18232961-18236636,18236810-18237288,18237549-18237629,
18238033-18238041,18238096-18238248
Length = 1465
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 40 PPDSLPAKPPSEGYPCEL 93
PPD L A+P ++G PC L
Sbjct: 1056 PPDRLSARPSTDGGPCNL 1073
>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 40 PPDSLPAKPPSEGYPCEL 93
PPD L A+P ++G PC L
Sbjct: 1056 PPDRLSARPSTDGGPCNL 1073
>01_06_0347 + 28592552-28593502
Length = 316
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 7 NPESPQSIPNQPP-DSLPAKPPSEGYPCELSLSTVSVPG 120
+P P QP D +PA PPS + SLS++S PG
Sbjct: 70 SPTRPVVFSMQPHFDLVPALPPSSPQVPQSSLSSLSAPG 108
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 353 HLSDRSKDCRTKSSPYFDSKVVGFMISFPSLTSALSFRY 237
H+S K+C + P +D + ++ FPS A++ R+
Sbjct: 376 HISSALKECMKLAFPDWDEDIPNWVSEFPSAIPAINNRF 414
>06_03_0824 +
25105450-25105482,25105649-25106485,25106580-25106738,
25106830-25106886,25106971-25107202,25107338-25107638,
25107703-25107976,25108051-25108152,25108244-25108525
Length = 758
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 353 HLSDRSKDCRTKSSPYFDSKVVGFMISFPSLTSALSFRY 237
H+S K+C + P +D + ++ FPS A++ R+
Sbjct: 714 HISSALKECMKLAFPDWDEDIPNWVSEFPSAIPAINNRF 752
>03_02_0225 +
6565337-6565369,6565564-6565734,6566113-6566400,
6566495-6566653,6566745-6566801,6566886-6567117,
6567253-6567553,6567618-6567891,6567966-6568067,
6568159-6568440
Length = 632
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 353 HLSDRSKDCRTKSSPYFDSKVVGFMISFPSLTSALSFRY 237
H+S K+C + P +D + ++ FPS A++ R+
Sbjct: 588 HISSALKECMKLAFPDWDEDIPNWVSEFPSAIPAINNRF 626
>02_05_0822 +
32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 52 LPAKPPSEGYPCELSLSTVSVPGFVCKGQLLFEDQFN 162
+P+ PP Y E+S + +V VC G + ++++N
Sbjct: 267 VPSAPPIHAYDQEISQVSQNVDANVCDGSTVKKEEYN 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.139 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,148,206
Number of Sequences: 37544
Number of extensions: 437686
Number of successful extensions: 1535
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1531
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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