Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0269
(741 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22) 29 3.0
SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05) 29 5.2
SB_44507| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_22280| Best HMM Match : CagA (HMM E-Value=3.3) 28 6.9
SB_3970| Best HMM Match : Drf_FH1 (HMM E-Value=1.2) 28 6.9
SB_19118| Best HMM Match : MutS_II (HMM E-Value=4) 28 6.9
SB_7882| Best HMM Match : DUF548 (HMM E-Value=3.3) 28 6.9
SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24) 28 9.1
SB_31663| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_29240| Best HMM Match : IncA (HMM E-Value=0.17) 28 9.1
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_23275| Best HMM Match : IncA (HMM E-Value=0.43) 28 9.1
>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
Length = 820
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 10 PESPQSIP-NQPPDSLPAKPPSEGYPCELSLSTVSVPGFV 126
P +P S+ N P +P PP + ++ ++T PG V
Sbjct: 703 PVTPTSLTANSSPSGIPPSPPDNAFMSKIPVNTAEGPGLV 742
>SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 211 GEPDFPFNVYLNDNAEVNDGKLIIKPTTLESKYGEDFVRQSLD-LSERCTGTVGTAQCLR 387
G D PFNV++ + +++D + I KPT +G+ + S + + ++ T V +A+ L
Sbjct: 265 GLVDLPFNVFVTEVLKLSDTEYIEKPT---KTFGKLLIAMSHNPIDKKLTVRVDSARGLP 321
Query: 388 EAS 396
E S
Sbjct: 322 EMS 324
>SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)
Length = 304
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 211 GEPDFPFNVYLNDNAEVNDGKLIIKPTTLESKYGEDFVRQSLD-LSERCTGTVGTAQCLR 387
G D PFNV++ + +++D + I KPT +G+ + S + + ++ T V +A+ L
Sbjct: 240 GLVDLPFNVFVTEVLKLSDTEYIEKPT---KTFGKLLIAMSHNPIDKKLTVRVDSARGLP 296
Query: 388 EAS 396
E S
Sbjct: 297 EMS 299
>SB_44507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 643
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 442 RHQFAFKYGRVEIRAKMPKGDWLYPEILLEPRDNIYGVRN 561
R+Q A K +V + + G WL P LL ++ G N
Sbjct: 504 RYQLAVKEAKVRLSLAVAPGVWLMPSDLLIKTQSVVGYNN 543
>SB_22280| Best HMM Match : CagA (HMM E-Value=3.3)
Length = 347
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +1
Query: 358 GTVGTAQCLREASGPLILPPIITAKIST---RHQFAFKYGRVEIRAKMPKGDWLYPE-IL 525
G G+AQ ++ L +I IS R+QFA + R ++ + G WL P ++
Sbjct: 190 GDSGSAQETKQVFSKLFESAVIENDISKSIQRYQFALQQARQKLDLALALGCWLSPSYLV 249
Query: 526 LEPRDNIYGVRN 561
+ +I G N
Sbjct: 250 INNNTSIAGYNN 261
>SB_3970| Best HMM Match : Drf_FH1 (HMM E-Value=1.2)
Length = 558
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 19 PQSIPNQPPDSLPAKPPSEGYPCELSLSTVSVP 117
P + P+QPP P P S+ +P + SLS S+P
Sbjct: 244 PPTPPSQPP---PEVPTSQAHPDKRSLSPTSLP 273
>SB_19118| Best HMM Match : MutS_II (HMM E-Value=4)
Length = 271
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +1
Query: 358 GTVGTAQCLREASGPLILPPIITAKIST---RHQFAFKYGRVEIRAKMPKGDWLYPE-IL 525
G G+AQ ++ L +I IS R+QFA + R ++ + G WL P ++
Sbjct: 114 GDSGSAQETKQVFSKLFESAVIENDISKSIQRYQFALQQARQKLDLALALGCWLSPSYLV 173
Query: 526 LEPRDNIYGVRN 561
+ +I G N
Sbjct: 174 INNNTSIAGYNN 185
>SB_7882| Best HMM Match : DUF548 (HMM E-Value=3.3)
Length = 428
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +1
Query: 442 RHQFAFKYGRVEIRAKMPKGDWLYPEILLEPRDNIYGVRNYASGILKIASVKGNAEFSKK 621
R+Q A + +V + + G WL P L+ ++ G N S+ NA +K
Sbjct: 318 RYQLAVQEAKVRLSLAVAPGVWLMPSDLVINTQSVVGYNNKLQKATDSMSLGANAINTKT 377
Query: 622 LYAGP-VMTGSDP 657
AG M G P
Sbjct: 378 KPAGAHNMAGGHP 390
>SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24)
Length = 1497
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Frame = +1
Query: 301 SKYGEDFVRQSLDLSERCTGTVGTAQCLREASGPLILPPIITAKIST---RHQFAFKYGR 471
+K G + +S+D+ G G A + L+ II I+ R+Q A + +
Sbjct: 146 TKAGLGRLDRSVDVRSSIAGARGPAMEAQAEFTKLLEDAIIENDIAQSVQRYQLAVQEAK 205
Query: 472 VEIRAKMPKGDWLYPEILLEPRDNIYGVRN 561
V + + G WL P L+ ++ G N
Sbjct: 206 VRLSLAVAPGVWLMPSDLVINTQSVVGYNN 235
>SB_31663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +1
Query: 358 GTVGTAQCLREASGPLILPPIITAKIST---RHQFAFKYGRVEIRAKMPKGDWLYPEILL 528
G G+AQ ++ L +I IS R+QFA + R ++ G WL P L+
Sbjct: 527 GDSGSAQETKQVFSKLFESAVIENDISKSIQRYQFALQQARQKLDLAFALGCWLSPSYLV 586
Query: 529 EPRD-NIYGVRN 561
D +I G N
Sbjct: 587 INDDTSIAGYNN 598
>SB_29240| Best HMM Match : IncA (HMM E-Value=0.17)
Length = 555
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +1
Query: 358 GTVGTAQCLREASGPLILPPIITAKIST---RHQFAFKYGRVEIRAKMPKGDWLYPEILL 528
G G+AQ ++ L +I IS R+QFA + R ++ G WL P L+
Sbjct: 398 GDSGSAQETKQVFSKLFESAVIENDISKSIQRYQFALQQARQKLDLAFALGCWLSPSYLV 457
Query: 529 EPRD-NIYGVRN 561
D +I G N
Sbjct: 458 INDDTSIAGYNN 469
>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1268
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +1
Query: 19 PQSIPNQPPDSLPAKPPSEGYPCELSLSTVSVPGFVCKGQLLFEDQFN 162
P S P Q P +PP +G P +L + P + Q+ + Q +
Sbjct: 1079 PASQPQQKPSPTIQQPPQQGQPAQLQQQQLQKPQQQSQPQIAQQQQLH 1126
>SB_23275| Best HMM Match : IncA (HMM E-Value=0.43)
Length = 1176
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +1
Query: 358 GTVGTAQCLREASGPLILPPIITAKIST---RHQFAFKYGRVEIRAKMPKGDWLYPEILL 528
G G+AQ ++ L +I IS R+QFA + R ++ G WL P L+
Sbjct: 1019 GDSGSAQETKQVFSKLFESAVIENDISKSIQRYQFALQQARQKLDLAFALGCWLSPSYLV 1078
Query: 529 EPRD-NIYGVRN 561
D +I G N
Sbjct: 1079 INDDTSIAGYNN 1090
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.139 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,670,157
Number of Sequences: 59808
Number of extensions: 514608
Number of successful extensions: 1721
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1714
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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