Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0269
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase ...    28   6.0  
AF067624-5|AAC17564.4|  506|Caenorhabditis elegans Hypothetical ...    28   6.0  
AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cut...    28   6.0  
Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U80437-4|AAK68244.1|   90|Caenorhabditis elegans Neurabin protei...    28   8.0  
U80437-3|AAK68243.1|  561|Caenorhabditis elegans Neurabin protei...    28   8.0  
U80437-2|AAL16317.1|  658|Caenorhabditis elegans Neurabin protei...    28   8.0  
U80437-1|AAB37620.1|  721|Caenorhabditis elegans Neurabin protei...    28   8.0  

>AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase
           protein.
          Length = 1497

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 477 LDTSIFEGK-LMPSADFRSYDGWQNKRTRS 391
           L +SIF GK +  + +F+ YDGW N    S
Sbjct: 12  LFSSIFGGKGIQQNEEFQRYDGWYNNLANS 41


>AF067624-5|AAC17564.4|  506|Caenorhabditis elegans Hypothetical
           protein M01B12.5a protein.
          Length = 506

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 154 QFNIPIHRGKIWVPEVKFPGEPDFP 228
           +FN+ +H GK+W+ +V    E D P
Sbjct: 288 EFNMLVHDGKLWIIDVSQSVEQDHP 312


>AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered
           cuticle protein 3 protein.
          Length = 1497

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 477 LDTSIFEGK-LMPSADFRSYDGWQNKRTRS 391
           L +SIF GK +  + +F+ YDGW N    S
Sbjct: 12  LFSSIFGGKGIQQNEEFQRYDGWYNNLANS 41


>Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical
           protein M02B1.3 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 35  ISLQTACPLNHHLKAIPVSYRYPQSQYLVLYAKGSCFSKISSIYQYT 175
           +S+ T   L HH+ +I V      S+  +LYA  +   ++SSI+ +T
Sbjct: 153 LSISTGVLLFHHVASIYVLSTAVLSKKFLLYAYWAMLMEVSSIFLHT 199


>U80437-4|AAK68244.1|   90|Caenorhabditis elegans Neurabin protein
           1, isoform c protein.
          Length = 90

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 16  SPQSIPNQPPDSLPAKPPSEGYPCELS 96
           SP+ +  QPP  LP KPPS+  P  +S
Sbjct: 37  SPR-LQRQPPPPLPPKPPSQCPPSPMS 62


>U80437-3|AAK68243.1|  561|Caenorhabditis elegans Neurabin protein
           1, isoform b protein.
          Length = 561

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 16  SPQSIPNQPPDSLPAKPPSEGYPCELS 96
           SP+ +  QPP  LP KPPS+  P  +S
Sbjct: 37  SPR-LQRQPPPPLPPKPPSQCPPSPMS 62


>U80437-2|AAL16317.1|  658|Caenorhabditis elegans Neurabin protein
           1, isoform d protein.
          Length = 658

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 16  SPQSIPNQPPDSLPAKPPSEGYPCELS 96
           SP+ +  QPP  LP KPPS+  P  +S
Sbjct: 37  SPR-LQRQPPPPLPPKPPSQCPPSPMS 62


>U80437-1|AAB37620.1|  721|Caenorhabditis elegans Neurabin protein
           1, isoform a protein.
          Length = 721

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 16  SPQSIPNQPPDSLPAKPPSEGYPCELS 96
           SP+ +  QPP  LP KPPS+  P  +S
Sbjct: 37  SPR-LQRQPPPPLPPKPPSQCPPSPMS 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.139    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,690,833
Number of Sequences: 27780
Number of extensions: 398614
Number of successful extensions: 1344
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)