Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0269
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   0.99 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.2  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 146 KSNCPLHTKP 117
           K+NCPLH KP
Sbjct: 344 KNNCPLHCKP 353


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 49   SLPAKPPSEGYPCE--LSLSTVSVPGFVCKGQLLF 147
            SL  KP   G+P +  LSL  +SVP    K  L+F
Sbjct: 967  SLDGKPL--GFPLDRPLSLGALSVPNIFVKDVLVF 999


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 208 PGEPDFPFNVYLNDNAEVNDGKLIIKPTTLESKYGE 315
           P EPDF  +V   DN  VN  K + +     +K+ E
Sbjct: 118 PLEPDFTSDVTERDNHLVNAFKTLTQEPKNTNKFLE 153


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 499 GDWLYPEILLEPRDNIYGVRNY 564
           G+W+YP  +  P  N     NY
Sbjct: 546 GNWIYPASMTIPGSNSAVFTNY 567


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 447 MPSADFRSYDGWQNKRTRSFSQA 379
           M ++D  SYD W+N   ++ ++A
Sbjct: 1   METSDDDSYDFWKNWDLKNLTEA 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.139    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,037
Number of Sequences: 438
Number of extensions: 4940
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)