Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0269
(741 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52950.1 68416.m05837 CBS domain-containing protein / octicos... 31 1.1
At3g22070.1 68416.m02785 proline-rich family protein contains pr... 31 1.1
At2g45490.1 68415.m05658 protein kinase, putative contains prote... 29 2.4
At5g59940.1 68418.m07516 DC1 domain-containing protein / UV-B li... 29 3.2
At4g18570.1 68417.m02749 proline-rich family protein common fami... 29 3.2
At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to uclacy... 29 3.2
At2g36380.1 68415.m04464 ABC transporter family protein related ... 29 3.2
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 29 3.2
At1g05000.1 68414.m00501 tyrosine specific protein phosphatase f... 29 3.2
At5g23150.1 68418.m02707 PWWP domain-containing protein identica... 29 4.3
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 28 7.5
At2g22510.1 68415.m02670 hydroxyproline-rich glycoprotein family... 28 7.5
At1g72750.1 68414.m08412 mitochondrial import inner membrane tra... 28 7.5
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 28 7.5
At5g55960.1 68418.m06979 expressed protein 27 9.9
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 27 9.9
>At3g52950.1 68416.m05837 CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein contains Pfam profiles: PF00571 CBS domain,
PF00564: PB1 domain
Length = 556
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -2
Query: 332 DCRTKSSPYFDSKVVGFMISFPSLTSALSFRYTLKGKSGSPGNFTSGTQILPLCIGIL 159
D +++ S +G + S+PSL SF + + G FTSG + L +GI+
Sbjct: 388 DTQSEMSAMMHHSDIGKLSSYPSLGLGNSFSFKFEDLKGRVHRFTSGAENLEELMGIV 445
>At3g22070.1 68416.m02785 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 178
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +1
Query: 7 NPESPQSIPNQPPDSLPAKPPSEGYPCELSLSTVSVP 117
NP +P PN PP S P PP E P L T + P
Sbjct: 100 NPPAPIVNPNPPPPSTP-NPPPEFSPPPPDLDTTTAP 135
>At2g45490.1 68415.m05658 protein kinase, putative contains protein
kinase domain, Pfam:PF00069; similar to protein kinase
p46XlEg22 [Xenopus laevis] gi|609280|emb|CAA78914
Length = 288
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 502 DWLYPEILLEPRDNIYGVRNYASGILKIASVKGNAEF 612
D+L PE ++E RD+ Y V N+ GIL + GN F
Sbjct: 182 DYLAPE-MVENRDHDYAVDNWTLGILCYEFLYGNPPF 217
>At5g59940.1 68418.m07516 DC1 domain-containing protein / UV-B
light-insensitive protein, putative similar to ULI3
(UV-B light insensitive) [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 651
Score = 29.1 bits (62), Expect = 3.2
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Frame = +1
Query: 1 GLNPESPQSIPNQPPDSLPA---KPPSEGYPCELSLSTVSVPGFVCKGQLLFEDQFNIP- 168
G+NP SP +I + P K E PCE+ ++ P + C G L+ F++
Sbjct: 109 GINP-SPPAIEHPICHDHPLVFLKKREEKAPCEVCKDSIGGPSYSCLGCDLY---FHVDC 164
Query: 169 IHRGKIWVPEVKFPGEPDFPFNVY----LNDNAE 258
+H K EV P P P + L DNAE
Sbjct: 165 VHLSK----EVNHPCHPSHPLKLIASESLTDNAE 194
>At4g18570.1 68417.m02749 proline-rich family protein common family
members: At3g25690, At4g04980, At5g61090 [Arabidopsis
thaliana]
Length = 642
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +1
Query: 13 ESPQSIPNQPPDSLPAKPPSEGYPCELSLSTVSVPGF 123
+ P +P PP P KPPS G S PGF
Sbjct: 23 DMPSPLPLPPPPPPPLKPPSSGSATTKPPINPSKPGF 59
>At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to
uclacyanin 3 GI:3395770 from [Arabidopsis thaliana];
contains Pfam profile PF02298: Plastocyanin-like domain;
identical to cDNA uclacyanin 3 (UCC3)GI:3395769
Length = 222
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 7 NPESPQSIPNQPPD--SLPAKPPSEGYPCELSLSTVSVP 117
+P S S P+ PP S P+ PPS P SL S+P
Sbjct: 130 SPPSTPSTPSSPPSTPSTPSSPPSPPSPPSPSLPPSSLP 168
>At2g36380.1 68415.m04464 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1453
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 307 YGEDFVRQSLDLSERCTGTVGTAQCLREAS 396
+GE VR+SLD S RC G Q L E S
Sbjct: 259 FGEMTVRESLDFSGRCLGVGTRYQLLTELS 288
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +1
Query: 19 PQSIPNQPPDSLPAKPP--SEGYPCELSLSTVSVPGFV-CK 132
P P +PP S P KPP YP + + S V+V G V CK
Sbjct: 199 PTKAPVKPPVSPPTKPPVTPPVYPPKFNRSLVAVRGTVYCK 239
>At1g05000.1 68414.m00501 tyrosine specific protein phosphatase
family protein contains tyrosine specific protein
phosphatases active site, PROSITE:PS00383
Length = 215
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 271 KLIIKPTTLESKYGEDFVRQSLDLSE 348
KL+ K TT E GEDF R +++SE
Sbjct: 2 KLVEKTTTTEQDNGEDFCRTIIEVSE 27
>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
cDNA putative transcription factor (HUA2) GI:4868119;
contains Pfam profile PF00855: PWWP domain
Length = 1392
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 4 LNPESPQSIPNQPPDSLPAKPPSEGYP 84
L P P P PP SLP PP+ +P
Sbjct: 1075 LPPSPPPPSPPLPPSSLPPPPPAALFP 1101
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Frame = +1
Query: 1 GLNPESP----QSIPNQPPDSLPAKPPSEGYPCE 90
G NPE P QS P PP P+ PP P +
Sbjct: 350 GYNPEEPPYPQQSYPPNPPRQPPSHPPPGSAPSQ 383
>At2g22510.1 68415.m02670 hydroxyproline-rich glycoprotein family
protein similar to proline-rich cell wall protein
[Gossypium barbadense] gi|451544|gb|AAA79364; contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 124
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 7 NPESPQSIPNQPPDSLPAKPPS--EGYPCELSLSTVSVPGF 123
NP P +IPN P ++P P S +P L S ++P F
Sbjct: 78 NPAQPINIPNFPQINIPNFPISIPNNFPFNLPTSIPTIPFF 118
>At1g72750.1 68414.m08412 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
contains Pfam PF02466: Mitochondrial import inner
membrane translocase subunit Tim17
Length = 188
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 229 FNVYLNDNAEVNDGKLIIK-PTTLESKYGEDFVRQSLDLSERCTGTVGTA 375
+N Y N +N + + K PT+ E + E+ +RQ E T GTA
Sbjct: 18 YNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGTA 67
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 10 PESPQSIPNQPPDSLPAKPPS-EGYPC 87
P PQ P PP+ PA PP+ + PC
Sbjct: 72 PPKPQPKPAPPPEPKPAPPPAPKPVPC 98
>At5g55960.1 68418.m06979 expressed protein
Length = 648
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 19 PQSIPNQPPDSLPAKPPSEGYPCELSLSTV 108
PQ P+ S P KP +G + SLSTV
Sbjct: 32 PQDPPSSSSSSPPRKPSGDGSSSKTSLSTV 61
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = +1
Query: 406 ILPPIITAKISTRHQFAFKYGRVEIRAKMPKGDWLYPEILLEPRDNI 546
+LPP I K F E + D L E + EPRDN+
Sbjct: 258 VLPPQILLKCPKEASFCLWLLHPEPTCRPSMSDLLQSEFITEPRDNL 304
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.139 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,739,854
Number of Sequences: 28952
Number of extensions: 375361
Number of successful extensions: 1323
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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