Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0268
         (627 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    23   1.6  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   2.1  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   6.4  

>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/22 (31%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 69  FFGY-L*SHILFVLVVLFRRWC 131
           F+G+ + +H+LF+++ +   WC
Sbjct: 114 FYGFVIVAHLLFLVIFVLNIWC 135


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 510 VAILRAMPNLGIIYGNRDRESDGKMVFDVIQRMEDTEP 623
           +A L   P L I     +   DG +VF     +EDT P
Sbjct: 197 IAALFTSPILAITQYGPEEYVDGSIVFVCFSLVEDTLP 234


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
 Frame = +2

Query: 164 LSACAAV---LARNDGPRACEEHG 226
           + +C AV     RN  P  C EHG
Sbjct: 19  VESCIAVGVGSGRNSAPSICGEHG 42


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,883
Number of Sequences: 336
Number of extensions: 2941
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)