Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0268
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63... 42 5e-04
11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530... 41 0.001
12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837 29 3.0
03_06_0098 + 31641760-31642386,31643173-31644114 29 3.0
01_06_1106 + 34563368-34563679 29 3.0
04_04_0247 + 23888251-23888551,23889804-23890186 29 4.0
11_01_0307 + 2304500-2306023 28 5.3
07_03_0176 + 14767199-14768527 28 5.3
02_05_0512 + 29675835-29675901,29676681-29676813,29677020-296771... 28 5.3
02_02_0140 + 7125914-7126264,7126426-7126677,7126766-7126861,712... 28 5.3
09_04_0600 + 18883094-18883393,18883606-18883755,18883851-188841... 27 9.2
05_04_0174 - 18728199-18731411 27 9.2
>06_01_0079 -
633595-633985,634346-634543,634864-635036,635355-635599,
635683-635860,636291-636473,636769-636873,637709-637846,
637933-638925
Length = 867
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/51 (37%), Positives = 33/51 (64%)
Frame = +3
Query: 369 KLLLLGAGESGKSTIVKQMKIIHESGFTNEDFKQYRPVVYSNTIQSLVAIL 521
KLL+LG+ +G STI KQ K+++++ FT E+ + ++ SN + L +L
Sbjct: 456 KLLILGSPGAGTSTIFKQAKLLYDTRFTQEELDSIKLMIQSNMFKYLGILL 506
>11_01_0656 -
5301048-5301441,5301779-5301976,5302056-5302228,
5302691-5302935,5303014-5303191,5303578-5303760,
5303858-5303962,5304621-5304758,5304846-5305802
Length = 856
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +3
Query: 369 KLLLLGAGESGKSTIVKQMKIIHESGFTNEDFKQYRPVVYSNTIQSLVAIL 521
KLLLLG +G STI KQ K ++ + FT E+ + + ++ SN + L +L
Sbjct: 444 KLLLLGPDGAGTSTIFKQAKYLYGTRFTQEELENIKLIIQSNMFKYLGILL 494
>12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837
Length = 364
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 411 IVKQMKIIHESGFTNEDFKQYRPVVYSNTIQSLVAILRAMPNLGIIYGN 557
++K +K IH+ GFT+E FK + ++ I + R + +L + N
Sbjct: 305 LLKVLKAIHKKGFTDEGFKDHALLLEKQDIDGKLGKSREVRSLTNVVKN 353
>03_06_0098 + 31641760-31642386,31643173-31644114
Length = 522
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = -1
Query: 315 CCAQGQHVPQRMKRSPWL*RARPGSLRAAAPCSSHARGPSLRASTAAHAL-NRARVRFLT 139
CC + + MK + + G+ A+ SS R P++ + AH+ R+R+
Sbjct: 30 CCPSQAVLQKTMKNQNQQAKPKGGASPLASKASSVQRAPTISSERRAHSTPTRSRINSDE 89
Query: 138 IKGTNAEIARPRQIRYGFTNSRKKIR*KLKTSYSALNVNMFEVI 7
K AE + P + N R + + K+ + L ++ +V+
Sbjct: 90 QKCAPAENSTPNPPK--VANDRPQKQHKISVGFGQLEMSDLKVV 131
>01_06_1106 + 34563368-34563679
Length = 103
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/63 (36%), Positives = 31/63 (49%)
Frame = -1
Query: 363 PWQPGCHPP*GSSRSACCAQGQHVPQRMKRSPWL*RARPGSLRAAAPCSSHARGPSLRAS 184
P +PG PP S+ + A+ +H P R +R PW R +P LR P H + S AS
Sbjct: 32 PPRPGRVPP--SASAPPPAELRHGPNRCRRPPWR-RLQPARLR-HGPDKHHLQLGSAVAS 87
Query: 183 TAA 175
A
Sbjct: 88 PLA 90
>04_04_0247 + 23888251-23888551,23889804-23890186
Length = 227
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = -1
Query: 237 RAAAPCSSHARGPSLRASTAAHALNRARVRFLTIKGTNAEIARPRQIRY 91
R AA +SHA GP+ RA A A++RA R ++ K + +IA RY
Sbjct: 50 RLAAAAASHAGGPTARAIAA--AVSRA-ARSISSKLLDDDIAARLSFRY 95
>11_01_0307 + 2304500-2306023
Length = 507
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 530 AQLGHHLWQ*RPRKRW*DGVRRDSTDGG 613
A +GH LWQ R R+R G+ ++ T G
Sbjct: 463 AYVGHRLWQRRRRRRRAGGMEQELTSSG 490
>07_03_0176 + 14767199-14768527
Length = 442
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 327 SRSACCAQGQHVPQRMKRSPWL*RARPGSLRAAAPCSS 214
+R+ C A +P ++ PWL R P AAA +S
Sbjct: 39 ARAVCAAWSSALPDKIDHFPWLLRLPPAHGDAAAAAAS 76
>02_05_0512 +
29675835-29675901,29676681-29676813,29677020-29677164,
29677586-29678407
Length = 388
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = -1
Query: 360 WQPGCHPP*GSSRSACCAQGQHVPQRMKRSPWL*RARPGSLRAAA 226
W PP S CC +G +P RSPW RA AAA
Sbjct: 151 WNADRSPPWWSPSRWCCPRGSRIP----RSPWQIRAGIDKQGAAA 191
>02_02_0140 +
7125914-7126264,7126426-7126677,7126766-7126861,
7127013-7127187,7127283-7127363,7127451-7127548,
7127828-7127920,7128607-7128678,7128998-7129117,
7129210-7129260,7130026-7130211,7130355-7130411
Length = 543
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 233 RQRRAPRMLAARRCAQVPPR 174
R+RRAP ML RR A+ PPR
Sbjct: 75 RRRRAPPMLLRRRRARRPPR 94
>09_04_0600 +
18883094-18883393,18883606-18883755,18883851-18884142,
18884697-18884858,18884958-18885021,18887573-18888080
Length = 491
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = -1
Query: 246 GSLRAAAPCS-SHARGPSLRASTAAHALNRARVRFLTIKGTNAEIARPRQIRYGFTNSRK 70
G++RAAA C +HARG ++ A L R R R + +A+ ++R R+
Sbjct: 34 GAVRAAAACGEAHARGVAMPAGGGLGGLRRRR-RSAPRRDADADADAQSKMRTEKHGGRR 92
Query: 69 KIR*KLKTSYSAL 31
+ R +++ S+L
Sbjct: 93 RRRHVVQSVLSSL 105
>05_04_0174 - 18728199-18731411
Length = 1070
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 333 LKEDGIQAAKDIKLLLLGAGESGKSTIVKQMKIIHESGFT 452
LK+D ++A + K+L++ GE+G + + +HE G+T
Sbjct: 409 LKDDLLKAIDEHKVLIV-VGETGSGKTTQIPQYLHEVGYT 447
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,369,994
Number of Sequences: 37544
Number of extensions: 379502
Number of successful extensions: 1313
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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