Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0268
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8302| Best HMM Match : G-alpha (HMM E-Value=0)                     142   2e-34
SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)               131   5e-31
SB_30236| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_19713| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   1e-13
SB_14105| Best HMM Match : G-alpha (HMM E-Value=0)                     64   9e-11
SB_58122| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   5e-06
SB_4844| Best HMM Match : G-alpha (HMM E-Value=3.6e-10)                46   2e-05
SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)                    29   4.1  
SB_27721| Best HMM Match : CRPA (HMM E-Value=2.4)                      28   7.1  
SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1)                    28   7.1  
SB_48248| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_8302| Best HMM Match : G-alpha (HMM E-Value=0)
          Length = 315

 Score =  142 bits (345), Expect = 2e-34
 Identities = 71/120 (59%), Positives = 86/120 (71%)
 Frame = +3

Query: 267 MGCXXXXXXXXXXXXXKQIEKNLKEDGIQAAKDIKLLLLGAGESGKSTIVKQMKIIHESG 446
           MGC             K IEKNLK +G +A +D+KLLLLGAGESGKSTIVKQM+IIH+ G
Sbjct: 1   MGCTLSAEERAAIARSKAIEKNLKLEGARAERDVKLLLLGAGESGKSTIVKQMRIIHDHG 60

Query: 447 FTNEDFKQYRPVVYSNTIQSLVAILRAMPNLGIIYGNRDRESDGKMVFDVIQRMEDTEPF 626
           F+ ED+ QYRP+V+SNTI SL+ I+RAM  L I + N  R  D K+VFDVI R +DTEPF
Sbjct: 61  FSPEDYIQYRPLVFSNTIYSLLTIIRAMDKLRIDFENDARLMDAKLVFDVIARADDTEPF 120


>SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score =  131 bits (316), Expect = 5e-31
 Identities = 64/118 (54%), Positives = 83/118 (70%)
 Frame = +3

Query: 267 MGCXXXXXXXXXXXXXKQIEKNLKEDGIQAAKDIKLLLLGAGESGKSTIVKQMKIIHESG 446
           MGC             K I+KNL+ DG +AA+++KLLLLGAGESGKSTIVKQMKIIHE G
Sbjct: 1   MGCTLSAEDKAAAERSKMIDKNLRADGERAAREVKLLLLGAGESGKSTIVKQMKIIHEHG 60

Query: 447 FTNEDFKQYRPVVYSNTIQSLVAILRAMPNLGIIYGNRDRESDGKMVFDVIQRMEDTE 620
           ++ E+  QY+ VVYSNTIQS++AI+RAM  L I +G+ DR  D + +F +   MED +
Sbjct: 61  YSTEECTQYKQVVYSNTIQSMIAIIRAMGTLKIEFGHPDRADDAREMFALAGSMEDVK 118


>SB_30236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 38/78 (48%), Positives = 56/78 (71%)
 Frame = +3

Query: 318 QIEKNLKEDGIQAAKDIKLLLLGAGESGKSTIVKQMKIIHESGFTNEDFKQYRPVVYSNT 497
           +IEK +++D     +++KLLLLG GESGKST +KQM+IIH  G+++ED + Y P+VY N 
Sbjct: 18  EIEKQIRQDKRNQRRELKLLLLGTGESGKSTSIKQMRIIHGQGYSDEDKRGYIPLVYQNI 77

Query: 498 IQSLVAILRAMPNLGIIY 551
           I ++ ++ RAM  L I Y
Sbjct: 78  ITAMHSLTRAMETLKIPY 95


>SB_19713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 34/91 (37%), Positives = 57/91 (62%)
 Frame = +3

Query: 315 KQIEKNLKEDGIQAAKDIKLLLLGAGESGKSTIVKQMKIIHESGFTNEDFKQYRPVVYSN 494
           ++I+K + ++  Q  + +K+LLLGAGESGKST +KQM+II+   F  +  ++Y+PVVYSN
Sbjct: 228 QKIDKQIAQEKAQLRRQVKILLLGAGESGKSTFLKQMRIIYGKDFDADALQEYKPVVYSN 287

Query: 495 TIQSLVAILRAMPNLGIIYGNRDRESDGKMV 587
            ++ +  +  A   L I +   D E   + +
Sbjct: 288 ILKGMKVLADARRKLRIDWDAPDNEMHAERI 318


>SB_14105| Best HMM Match : G-alpha (HMM E-Value=0)
          Length = 320

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 29/83 (34%), Positives = 53/83 (63%)
 Frame = +3

Query: 315 KQIEKNLKEDGIQAAKDIKLLLLGAGESGKSTIVKQMKIIHESGFTNEDFKQYRPVVYSN 494
           + I+  L ++  + +++I+LL L +G SGKST +KQ+KI+++ GF  ++  +YRP VY  
Sbjct: 24  QHIDALLDQERERKSQEIQLLTLVSGNSGKSTFIKQLKIVYDDGFNEKERLEYRPQVYRL 83

Query: 495 TIQSLVAILRAMPNLGIIYGNRD 563
              ++  I RA+  LG+ + + D
Sbjct: 84  LAGNIAKITRAVEQLGLHFNSHD 106


>SB_58122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 20/54 (37%), Positives = 34/54 (62%)
 Frame = +3

Query: 402 KSTIVKQMKIIHESGFTNEDFKQYRPVVYSNTIQSLVAILRAMPNLGIIYGNRD 563
           KST +KQ+KI+++ GF  ++  +YRP VY     ++  I RA+  LG+ + + D
Sbjct: 2   KSTFIKQLKIVYDDGFNEKERLEYRPQVYRLLAGNIAKITRAVEQLGLHFNSHD 55


>SB_4844| Best HMM Match : G-alpha (HMM E-Value=3.6e-10)
          Length = 290

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = +3

Query: 384 GAGESGKSTIVKQMKIIHE-SGFTNEDFKQYRPVVYSNTIQSLVAILRAMPNL 539
           GAGESGKSTIVKQM+I+H+  GFT  + +Q    +  N   +++ I  AM  L
Sbjct: 156 GAGESGKSTIVKQMRILHDVHGFTELEKRQKIEDIKKNIRDAILTITGAMSTL 208


>SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 383 WCWRIGQEYYSQTDE 427
           W +RI +EY+SQTDE
Sbjct: 387 WAYRIAEEYFSQTDE 401


>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
          Length = 1348

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 402  KSTIVKQMKIIHESGFTNEDFKQYRPVV 485
            KS I  +   +H SG  +E FKQYR  V
Sbjct: 997  KSLIASRQAALHNSGKESEAFKQYRNAV 1024


>SB_27721| Best HMM Match : CRPA (HMM E-Value=2.4)
          Length = 161

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 199 VVARKYRRARAQSRTRAFFNYKGHQRR-NSTTKTNKIW 89
           +VAR Y R ++ +R   F  Y+  +RR    T+TN ++
Sbjct: 109 IVARSYERVQSPARASEFGRYRRIRRRVRLQTQTNNVY 146


>SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1)
          Length = 1250

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -1

Query: 258 RARPGSLRAAAPCSS--HARGP-SLRASTAAHALNRARVRFLTIKGTNAEI 115
           RA P + +   PC S    RGP S   + AAH+++  R  +  +KG  +++
Sbjct: 312 RAVPAAKQGFRPCESARRGRGPASSPRAHAAHSMSGKRSDYTALKGEESDL 362


>SB_48248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 150 RFLTIKGTNAEIARPRQIRYGFTNSRKKIR*KLKTSYSALNV 25
           ++ +I G+N + A+        TN+ K+ + K+K SYS  N+
Sbjct: 155 KYASIIGSNGKSAKHHSNGNAITNNSKECKGKVKVSYSEPNL 196


>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +3

Query: 360 KDIKLLLLGAGESGKSTIVKQM 425
           +++++LLLG   SGK+TI+K +
Sbjct: 16  REMRILLLGLDNSGKTTILKSL 37


>SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1125

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 375 LLLGAGESGKSTIVKQMKIIHESGFTNE 458
           +L G  E GK  I+KQ+K+  + GF N+
Sbjct: 421 ILQGEYEWGKGEILKQLKLAVKDGFLNQ 448


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,272,299
Number of Sequences: 59808
Number of extensions: 411709
Number of successful extensions: 988
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)