Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0268
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 333 LKEDGIQAAKDIKLLLLGAGESGKSTIVKQMKIIHESGFTNE 458
           L  + I     I +  +G    GKSTIVK +  +    F NE
Sbjct: 32  LSREVISRQATINIGTIGHVAHGKSTIVKAISGVQTVRFKNE 73


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +2

Query: 383 WCWRIGQEYYSQ 418
           WCW   +EY  Q
Sbjct: 458 WCWDTRKEYIPQ 469


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/41 (26%), Positives = 14/41 (34%)
 Frame = -2

Query: 533 GHGTQDGDERLDRIAVDHGPVLFEVFICESTFMDNFHLFDY 411
           GH   D D   D +      V+    IC S  +   H   Y
Sbjct: 118 GHWIGDHDVDKDELITGWSAVVITAAICTSGIVGRTHTVGY 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,609
Number of Sequences: 438
Number of extensions: 3400
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)