Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0267
         (760 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    22   4.6  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    22   4.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   6.1  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 162 VGILNLKIVFSARHYLPIRFPFC 230
           + +LN K+ F+A+ +  + + FC
Sbjct: 377 IRLLNTKLQFTAKDFFNLDWTFC 399


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 162 VGILNLKIVFSARHYLPIRFPFC 230
           + +LN K+ F+A+ +  + + FC
Sbjct: 333 IRLLNTKLQFTAKDFFNLDWTFC 355


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +2

Query: 32  VAYAAILGTYPSFIRYLSFCCKL 100
           +  + +LG YPS+++ +  C +L
Sbjct: 14  ILLSLLLGLYPSYLQTVGKCQRL 36


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,866
Number of Sequences: 336
Number of extensions: 4238
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)