Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0267
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0297 - 2314687-2316021                                           29   3.0  
07_03_1557 - 27699675-27699972,27700546-27700630,27700741-277008...    29   4.0  

>05_01_0297 - 2314687-2316021
          Length = 444

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 323 LVIIANSKGTAKPLFGKNYSGNLCINPKAGT 415
           LV+IAN +G A+      Y GN C+ P A T
Sbjct: 288 LVVIANLRGVAELNLPGGYYGNACVAPTAIT 318


>07_03_1557 -
           27699675-27699972,27700546-27700630,27700741-27700847,
           27700942-27701135,27701252-27701368,27701466-27701631,
           27701723-27701887,27702185-27703428
          Length = 791

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
 Frame = +2

Query: 347 GTAKPLFGKNYSGNLCINPKAGTGKH------HYPAAWRSGLWMG 463
           GT     G  Y G+  +N K G GK       HY   WRSGL  G
Sbjct: 132 GTYTGAAGDTYRGSWSMNLKHGHGKKSYANGDHYDGEWRSGLQDG 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,216,061
Number of Sequences: 37544
Number of extensions: 390097
Number of successful extensions: 635
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)