Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0267
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p...    32   0.38 
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ...    32   0.38 
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ...    32   0.38 
Z68301-6|CAA92621.1|  170|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical p...    28   8.3  

>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
            protein C24F3.5 protein.
          Length = 1479

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +2

Query: 275  FVRNKTKRPIVLRSRSLVIIANSKGTAKPLFGKNYSGNLCINPKAGTGKHHYPAA-WRSG 451
            F R  T +P      S + + N  GT +    K  SGN+   P AGT     P + + +G
Sbjct: 1125 FERGTTLKPGARIKNSYIFVTNPLGTMEDAQDKGASGNIPNRPAAGTEPVQKPTSDYIAG 1184

Query: 452  LWMGQSLQKYI*NFD 496
              M      YI N++
Sbjct: 1185 SSMSIDDMSYITNYE 1199


>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
            protein C24F3.5 protein.
          Length = 1479

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +2

Query: 275  FVRNKTKRPIVLRSRSLVIIANSKGTAKPLFGKNYSGNLCINPKAGTGKHHYPAA-WRSG 451
            F R  T +P      S + + N  GT +    K  SGN+   P AGT     P + + +G
Sbjct: 1125 FERGTTLKPGARIKNSYIFVTNPLGTMEDAQDKGASGNIPNRPAAGTEPVQKPTSDYIAG 1184

Query: 452  LWMGQSLQKYI*NFD 496
              M      YI N++
Sbjct: 1185 SSMSIDDMSYITNYE 1199


>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
            protein C24F3.5 protein.
          Length = 1479

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +2

Query: 275  FVRNKTKRPIVLRSRSLVIIANSKGTAKPLFGKNYSGNLCINPKAGTGKHHYPAA-WRSG 451
            F R  T +P      S + + N  GT +    K  SGN+   P AGT     P + + +G
Sbjct: 1125 FERGTTLKPGARIKNSYIFVTNPLGTMEDAQDKGASGNIPNRPAAGTEPVQKPTSDYIAG 1184

Query: 452  LWMGQSLQKYI*NFD 496
              M      YI N++
Sbjct: 1185 SSMSIDDMSYITNYE 1199


>Z68301-6|CAA92621.1|  170|Caenorhabditis elegans Hypothetical
           protein W01B6.8 protein.
          Length = 170

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 164 YIRFSISLFIIWLVLLTYLVGITC 93
           Y + SI LF+ W ++L  ++G TC
Sbjct: 32  YSQISIILFLFWSLMLQLIIGTTC 55


>Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical
           protein F56H6.12 protein.
          Length = 668

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -3

Query: 185 YF*IQNTYIRFSISLFIIWLVLL---TYLVGITCNKMKGS 75
           YF I  T + F+  L  IW  L+    YL+G + NK+K S
Sbjct: 177 YFAISPTNVAFNSVLARIWQFLIGMVVYLLGASSNKLKDS 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,382,712
Number of Sequences: 27780
Number of extensions: 369795
Number of successful extensions: 756
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)