Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0267
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   7.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   7.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   7.2  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   7.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 446 NATRQDNGAYPCRLSGLY 393
           +A   D+GAY C+ S LY
Sbjct: 876 SAEASDSGAYFCQASNLY 893



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 577  KCLLCSSIMLVTVTEHQKVKSS 512
            K LLC +   + +T H K+ SS
Sbjct: 1463 KGLLCGNTYQLYLTSHNKIGSS 1484


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 446 NATRQDNGAYPCRLSGLY 393
           +A   D+GAY C+ S LY
Sbjct: 872 SAEASDSGAYFCQASNLY 889



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 577  KCLLCSSIMLVTVTEHQKVKSS 512
            K LLC +   + +T H K+ SS
Sbjct: 1459 KGLLCGNTYQLYLTSHNKIGSS 1480


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -3

Query: 386 CRYSFFQTVAWLFP*NWL 333
           C +SF  T+ +  P  W+
Sbjct: 149 CLFSFLNTIVYCVPAGWI 166


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 146 SLFIIWLVLLTYLVGITC 93
           SL  +WL +L+ + G TC
Sbjct: 349 SLTDMWLTMLSMISGATC 366


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 146 SLFIIWLVLLTYLVGITC 93
           SL  +WL +L+ + G TC
Sbjct: 317 SLTDMWLTMLSMISGATC 334


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 589 CKCEKCLLCSS 557
           C C KC+ CS+
Sbjct: 85  CSCNKCIGCSA 95


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 557  YYVGYRHGTSE 525
            YYVGYR  +SE
Sbjct: 1012 YYVGYRLSSSE 1022


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,156
Number of Sequences: 438
Number of extensions: 4619
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)