Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0266
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   208   5e-56
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   208   5e-56
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   5.9  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  208 bits (507), Expect = 5e-56
 Identities = 95/125 (76%), Positives = 103/125 (82%)
 Frame = +1

Query: 274 QGYRRCFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWR 453
           +G   CFVRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF R
Sbjct: 54  KGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLR 113

Query: 454 YFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLI 633
           YF            TSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC++KIFK+DG+ 
Sbjct: 114 YFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGIT 173

Query: 634 GLYRG 648
           GLYRG
Sbjct: 174 GLYRG 178



 Score =  103 bits (248), Expect = 1e-24
 Identities = 48/67 (71%), Positives = 58/67 (86%)
 Frame = +2

Query: 116 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAS 295
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D  
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 296 SVSPRSR 316
              P+ +
Sbjct: 61  VRIPKEQ 67



 Score = 32.7 bits (71), Expect = 0.003
 Identities = 28/124 (22%), Positives = 47/124 (37%)
 Frame = +1

Query: 277 GYRRCFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRY 456
           G   C  +I K  G+   +RG   +V      +A  F F D  + +      KKT F   
Sbjct: 158 GLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKTPFLIS 215

Query: 457 FXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIG 636
           +             S    YP D  R R+    G+   +  +    +C + I+K++G   
Sbjct: 216 WGIAQVVTTVAGIVS----YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNA 271

Query: 637 LYRG 648
            ++G
Sbjct: 272 FFKG 275


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  208 bits (507), Expect = 5e-56
 Identities = 95/125 (76%), Positives = 103/125 (82%)
 Frame = +1

Query: 274 QGYRRCFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWR 453
           +G   CFVRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF R
Sbjct: 54  KGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLR 113

Query: 454 YFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLI 633
           YF            TSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC++KIFK+DG+ 
Sbjct: 114 YFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGIT 173

Query: 634 GLYRG 648
           GLYRG
Sbjct: 174 GLYRG 178



 Score =  103 bits (248), Expect = 1e-24
 Identities = 48/67 (71%), Positives = 58/67 (86%)
 Frame = +2

Query: 116 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAS 295
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D  
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 296 SVSPRSR 316
              P+ +
Sbjct: 61  VRIPKEQ 67



 Score = 32.7 bits (71), Expect = 0.003
 Identities = 28/124 (22%), Positives = 47/124 (37%)
 Frame = +1

Query: 277 GYRRCFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRY 456
           G   C  +I K  G+   +RG   +V      +A  F F D  + +      KKT F   
Sbjct: 158 GLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKTPFLIS 215

Query: 457 FXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIG 636
           +             S    YP D  R R+    G+   +  +    +C + I+K++G   
Sbjct: 216 WGIAQVVTTVAGIVS----YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNA 271

Query: 637 LYRG 648
            ++G
Sbjct: 272 FFKG 275


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 314 CSLGIRTKHRRYPCNAGRRRS 252
           C LGI   ++R P   GR++S
Sbjct: 111 CLLGIVDDYQRNPSVVGRKKS 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,299
Number of Sequences: 438
Number of extensions: 3276
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)