Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0265
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    28   1.5  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   6.1  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   8.1  

>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +2

Query: 299 ITCIKHIVTSTQNSNSFYVNDLKTFLHSFIQRIQDLCF-SKRLYKMHEVCVLNCFL-FTN 472
           + C+   +TS+ N N + V+ LKT +   + R  DL    K L  +  VC+LN  L F N
Sbjct: 501 VQCLFENITSSLNENLYMVDMLKTLIIPAV-RSHDLPIREKGLECLSLVCLLNADLAFEN 559

Query: 473 L 475
           +
Sbjct: 560 V 560


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 441 YVS*IVFFLLICFSLKISSKCSQTYFEEEKITS*RNTFLTFYLVIRRQHLILNALTQTRI 620
           Y+S  +FF+   FSLK +  C   +   EK+         + ++I   H IL  +   + 
Sbjct: 116 YLSCGLFFVSYFFSLKNNPFCLMLFSSHEKMNYLHRWLSVYAVLISVLHGILFMIFSAQS 175

Query: 621 YK 626
           YK
Sbjct: 176 YK 177


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -3

Query: 519 RNTSENIYCLFLMKNKLVKRKQ---FKTHTSCI 430
           RN  + +  LFL+KN LV + Q   F  H +CI
Sbjct: 544 RNNDKQLARLFLIKNFLVLKDQLNSFDIHYACI 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,896
Number of Sequences: 5004
Number of extensions: 50397
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)