Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0265
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007           28   8.5  

>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
          Length = 952

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 39  WFVRIQFWRHSSCNRQPAQVLNCFTKHV 122
           WF   QFW  +SC+   A VL   TK V
Sbjct: 774 WFRNGQFWMTASCSAYLAAVLQVVTKVV 801


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,625,399
Number of Sequences: 37544
Number of extensions: 250835
Number of successful extensions: 417
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)