Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0265
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117195-29|CAB55017.2|  204|Caenorhabditis elegans Hypothetical...    30   1.9  
AF101307-3|AAC69212.2|  315|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF022983-7|AAB69943.1|  306|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF022983-6|AAK82916.1|  376|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z72515-3|CAA96683.2|  330|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AL117195-29|CAB55017.2|  204|Caenorhabditis elegans Hypothetical
           protein Y57A10A.14 protein.
          Length = 204

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 78  CRSCASRIVSGRTITATRIIWLL 10
           C+SC SR    RT    RIIWL+
Sbjct: 138 CKSCTSRYTRHRTTYHARIIWLI 160


>AF101307-3|AAC69212.2|  315|Caenorhabditis elegans Hypothetical
           protein F41H8.2 protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 233 KLISPHYAACLSLASCC 183
           KLI P Y+ACL ++ CC
Sbjct: 260 KLIGPFYSACLMVSGCC 276


>AF022983-7|AAB69943.1|  306|Caenorhabditis elegans Hypothetical
           protein R13D11.1 protein.
          Length = 306

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 233 KLISPHYAACLSLASCC 183
           KLI P Y+ACL ++ CC
Sbjct: 248 KLIGPFYSACLLVSGCC 264


>AF022983-6|AAK82916.1|  376|Caenorhabditis elegans Hypothetical
           protein R13D11.3 protein.
          Length = 376

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 233 KLISPHYAACLSLASCC 183
           KL+ P Y+ACL ++ CC
Sbjct: 325 KLVGPFYSACLLVSGCC 341


>Z72515-3|CAA96683.2|  330|Caenorhabditis elegans Hypothetical
           protein T11A5.3 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/64 (25%), Positives = 34/64 (53%)
 Frame = -3

Query: 342 LEF*VLVTMCLMHVIFYSTYNTL*TNLSDRTIYKIFKINFASLCRLSVIG*LLQAYLRSL 163
           L F +++T+C + V+ ++T+      L      K+F +NF  + +L + G +L    R +
Sbjct: 22  LVFNLVITICAVPVLIWATWK-----LWSMKYTKLFHVNFKIIIQLHLFGFMLHCSGRII 76

Query: 162 LYRL 151
           L+ +
Sbjct: 77  LHSI 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,119,479
Number of Sequences: 27780
Number of extensions: 274403
Number of successful extensions: 614
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)