Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0264
         (585 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    26   0.20 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   3.3  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   5.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   5.8  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   5.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.7  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 166 LKFVLQQSGLNQVQWTAVYTQHSMTTLAIR 77
           +K VL +SG++   +TA  T+H+ T+ A R
Sbjct: 270 IKMVLAESGVDTSIYTAHSTRHAATSAAAR 299


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 78  RIASVVMECCV*TAVHWT 131
           R+  V M+C    A HWT
Sbjct: 179 RLLGVAMDCLKGNAKHWT 196


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 432 TRNLTVKPSTKPS 470
           T   T KPSTKP+
Sbjct: 174 TTKFTTKPSTKPT 186


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 272 ISKALIAFYQKYVDEASKKEIKDI 343
           I K +IAFY K +   +  EIK I
Sbjct: 126 IVKPIIAFYYKPIKTLNGHEIKFI 149


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 52  SEYLDGLDGLTSCLLH 5
           S Y+DG+  +T C +H
Sbjct: 143 SPYMDGVPFVTQCPIH 158


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 24  SPSRPSKYSDVRKPPP 71
           SP  P +  DV+ PPP
Sbjct: 723 SPLTPHEAFDVKLPPP 738


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 24  SPSRPSKYSDVRKPPP 71
           SP  P +  DV+ PPP
Sbjct: 615 SPLTPHEAFDVKLPPP 630


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,491
Number of Sequences: 336
Number of extensions: 3043
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)