Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0264
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             169   1e-42
SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   3e-04
SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)               35   0.056
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        33   0.23 
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)                   31   0.91 
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_40269| Best HMM Match : bZIP_2 (HMM E-Value=9.3)                    28   6.4  
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)                     28   6.4  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  169 bits (411), Expect = 1e-42
 Identities = 78/97 (80%), Positives = 89/97 (91%)
 Frame = +2

Query: 158 KLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIK 337
           K++EPILLLGKE+F  VDIRV VKGGGH +++YAIRQAISK+L+A+YQKYVDE SKKEI+
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISKSLVAYYQKYVDEVSKKEIR 70

Query: 338 DILFQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 448
           DIL QYDRSLLVADPRR E KKFGGPGAR+RYQKSYR
Sbjct: 71  DILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107


>SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 34/99 (34%), Positives = 48/99 (48%)
 Frame = +2

Query: 50  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 229
           G +K + A A+  +G G + VN RP      RL Q K Q        +     D    V 
Sbjct: 338 GYRKRSVAKAWVMKGSGKITVNDRPFVEYFSRL-QDKQQILFPFQVVDCVGQFDASCHVL 396

Query: 230 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL 346
           GGG   Q  AIR AIS+AL+ F + ++ E  ++EI + L
Sbjct: 397 GGGLTGQAGAIRLAISRALLNFSEDHL-EPLQEEIPESL 434


>SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)
          Length = 391

 Score = 34.7 bits (76), Expect = 0.056
 Identities = 29/80 (36%), Positives = 37/80 (46%)
 Frame = +2

Query: 209 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILFQYDRSLLVADPRR 388
           DI+V V GGG   Q  AI+  I++ALI F           ++K  L +     +  D R 
Sbjct: 323 DIKVNVHGGGESGQAGAIKHGITRALIDF---------NADLKPTLSK--AGFVTRDARE 371

Query: 389 CEPKKFGGPGARARYQKSYR 448
            E KK G   AR R Q S R
Sbjct: 372 VERKKCGLRKARRRKQFSKR 391


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 284 LIAFYQKYVDEASKKEIKDILFQYDRSLLVADPRRCE 394
           ++AF QKY+D   +KE      Q+ + +LV+  R CE
Sbjct: 53  VLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
          Length = 513

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 235 WSCSTSLRYPTSYFK-GSDRLLPEICR 312
           WSCSTS+R  TS FK GS  LL  + R
Sbjct: 155 WSCSTSMRNRTSIFKAGSVPLLARLIR 181


>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2541

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +2

Query: 227 KGGGHVAQ--VYAIRQAISKALIAFYQKYV-DEASKKEIKDILFQYDRSLLVADPRRCEP 397
           K GGH++Q  +  I Q   K L A + K + DE  K++ K+I  + +RS +    ++ EP
Sbjct: 91  KLGGHLSQPKLKKITQVNKKKLRATHHKAILDEIMKEKAKEIDVKKERSTISRRGKKREP 150

Query: 398 K 400
           +
Sbjct: 151 E 151


>SB_40269| Best HMM Match : bZIP_2 (HMM E-Value=9.3)
          Length = 134

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/58 (20%), Positives = 31/58 (53%)
 Frame = +3

Query: 192 KNSPWSTSE*QSRVVVM*HKFTLSDKLFQRL*SPSTRNM*TKPQRRKSKTSYFNTIGV 365
           +  PW++++ Q   V M   + ++++   +L     +++ TKP++   K S  + +G+
Sbjct: 73  RGMPWTSNKMQMFYVAMRGNYGMTNEKMDQLIRNQQKSLKTKPKKSSVKLSEMSIVGI 130


>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
          Length = 873

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 129 TWLSPDCCSTNFKSQSFCSARKNS 200
           TW+ P C S+NF S S  ++  NS
Sbjct: 716 TWICPCCGSSNFSSGSIFTSSSNS 739


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,549,018
Number of Sequences: 59808
Number of extensions: 406111
Number of successful extensions: 932
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)