Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0264
(585 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 258 1e-68
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 258 1e-68
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 258 1e-68
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 258 1e-68
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 136 4e-32
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 110 4e-24
BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal... 56 1e-07
BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein. 56 1e-07
AF089726-1|AAG16773.1| 1090|Homo sapiens sodium bicarbonate cotr... 34 0.32
AF053755-1|AAF21720.1| 1000|Homo sapiens bicarbonate transporter... 34 0.32
AF047033-1|AAD38322.1| 1214|Homo sapiens sodium bicarbonate cotr... 34 0.32
AB012130-1|BAA25898.1| 1018|Homo sapiens sodium bicarbonate cotr... 34 0.32
BC093771-1|AAH93771.1| 1127|Homo sapiens NCK-associated protein ... 31 3.0
BC093769-1|AAH93769.1| 1127|Homo sapiens NCK-associated protein ... 31 3.0
Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex late... 31 4.0
BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for IM... 31 4.0
BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex pr... 31 4.0
BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex pr... 31 4.0
BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein. 31 4.0
AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex pr... 31 4.0
AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex pr... 31 4.0
AL122010-1|CAI23556.1| 979|Homo sapiens discs, large (Drosophil... 31 4.0
AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex p... 31 4.0
AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex pr... 31 4.0
AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein pr... 31 4.0
Y08201-1|CAA69383.1| 331|Homo sapiens rab geranylgeranyl transf... 29 9.1
X98001-1|CAA66638.1| 331|Homo sapiens geranylgeranyl transferas... 29 9.1
U49245-1|AAA91473.1| 331|Homo sapiens geranylgeranyl transferas... 29 9.1
M62302-2|AAA58501.1| 372|Homo sapiens growth/differentiation fa... 29 9.1
CR456941-1|CAG33222.1| 331|Homo sapiens RABGGTB protein. 29 9.1
BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for IM... 29 9.1
BC020790-1|AAH20790.1| 331|Homo sapiens Rab geranylgeranyltrans... 29 9.1
AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein. 29 9.1
AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein. 29 9.1
AL357314-5|CAI22393.1| 331|Homo sapiens Rab geranylgeranyltrans... 29 9.1
AK126054-1|BAC86416.1| 926|Homo sapiens protein ( Homo sapiens ... 29 9.1
AC003972-2|AAB94786.1| 372|Homo sapiens GDF-1 protein. 29 9.1
AB209023-1|BAD92260.1| 320|Homo sapiens Rab geranylgeranyltrans... 29 9.1
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 258 bits (631), Expect = 1e-68
Identities = 117/141 (82%), Positives = 135/141 (95%)
Frame = +2
Query: 26 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 205
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 206 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILFQYDRSLLVADPR 385
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 386 RCEPKKFGGPGARARYQKSYR 448
RCE KKFGGPGARARYQKSYR
Sbjct: 126 RCESKKFGGPGARARYQKSYR 146
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 258 bits (631), Expect = 1e-68
Identities = 117/141 (82%), Positives = 135/141 (95%)
Frame = +2
Query: 26 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 205
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 206 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILFQYDRSLLVADPR 385
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 386 RCEPKKFGGPGARARYQKSYR 448
RCE KKFGGPGARARYQKSYR
Sbjct: 126 RCESKKFGGPGARARYQKSYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 258 bits (631), Expect = 1e-68
Identities = 117/141 (82%), Positives = 135/141 (95%)
Frame = +2
Query: 26 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 205
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 206 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILFQYDRSLLVADPR 385
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 386 RCEPKKFGGPGARARYQKSYR 448
RCE KKFGGPGARARYQKSYR
Sbjct: 126 RCESKKFGGPGARARYQKSYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 258 bits (631), Expect = 1e-68
Identities = 117/141 (82%), Positives = 135/141 (95%)
Frame = +2
Query: 26 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 205
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 206 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILFQYDRSLLVADPR 385
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 386 RCEPKKFGGPGARARYQKSYR 448
RCE KKFGGPGARARYQKSYR
Sbjct: 126 RCESKKFGGPGARARYQKSYR 146
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 136 bits (330), Expect = 4e-32
Identities = 60/83 (72%), Positives = 75/83 (90%)
Frame = +2
Query: 26 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 205
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 206 VDIRVTVKGGGHVAQVYAIRQAI 274
VDIRV VKGGGHVAQ+Y Q +
Sbjct: 66 VDIRVRVKGGGHVAQIYGESQEL 88
Score = 31.5 bits (68), Expect = 2.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 291 PSTRNM*TKPQRRKSKTSYFNTIGVCW 371
P TRNM + RR+SKTS + G CW
Sbjct: 126 PITRNMWMRLPRRRSKTSSSSMTGPCW 152
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 110 bits (264), Expect = 4e-24
Identities = 57/106 (53%), Positives = 74/106 (69%)
Frame = +2
Query: 29 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 208
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ LQYKL E LLL KE+ + +
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 209 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL 346
DI V VKG GHV Q+YA+ Q ISKAL+ Y KYVDEAS +EIKD L
Sbjct: 78 DIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEAS-EEIKDTL 122
>BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal
protein S9 protein.
Length = 396
Score = 55.6 bits (128), Expect = 1e-07
Identities = 46/129 (35%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Frame = +2
Query: 50 GRKKTATAVAYC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 226
G++KTA A A K G G ++VNG L P + Q + Q ++ D+ TV
Sbjct: 274 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 332
Query: 227 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILFQYDRSLLVADPRRCEPKKF 406
GGG AQ AIR A++KAL +F + DE + + LL DPR E KK
Sbjct: 333 SGGGRSAQAGAIRLAMAKALCSFVTE--DE--------VEWMRQAGLLTTDPRVRERKKP 382
Query: 407 GGPGARARY 433
G GAR ++
Sbjct: 383 GQEGARRKF 391
>BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein.
Length = 302
Score = 55.6 bits (128), Expect = 1e-07
Identities = 46/129 (35%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Frame = +2
Query: 50 GRKKTATAVAYC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 226
G++KTA A A K G G ++VNG L P + Q + Q ++ D+ TV
Sbjct: 180 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 238
Query: 227 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILFQYDRSLLVADPRRCEPKKF 406
GGG AQ AIR A++KAL +F + DE + + LL DPR E KK
Sbjct: 239 SGGGRSAQAGAIRLAMAKALCSFVTE--DE--------VEWMRQAGLLTTDPRVRERKKP 288
Query: 407 GGPGARARY 433
G GAR ++
Sbjct: 289 GQEGARRKF 297
>AF089726-1|AAG16773.1| 1090|Homo sapiens sodium bicarbonate
cotransporter 2b protein.
Length = 1090
Score = 34.3 bits (75), Expect = 0.32
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = +3
Query: 435 RNLTVKPSTKPSGGIVAASCCHC-----DIIGWCTIKNIKSFLSFSFLHQKKKKK 584
RNLTV K G + ++C H D++ WC I +F SFL Q K K+
Sbjct: 671 RNLTVSECKKLRGVFLGSACGHHGPYIPDVLFWCVILFFTTFFLSSFLKQFKTKR 725
>AF053755-1|AAF21720.1| 1000|Homo sapiens bicarbonate transporter
protein.
Length = 1000
Score = 34.3 bits (75), Expect = 0.32
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = +3
Query: 435 RNLTVKPSTKPSGGIVAASCCHC-----DIIGWCTIKNIKSFLSFSFLHQKKKKK 584
RNLTV K G + ++C H D++ WC I +F SFL Q K K+
Sbjct: 581 RNLTVSECKKLRGVFLGSACGHHGPYIPDVLFWCVILFFTTFFLSSFLKQFKTKR 635
>AF047033-1|AAD38322.1| 1214|Homo sapiens sodium bicarbonate
cotransporter 3 protein.
Length = 1214
Score = 34.3 bits (75), Expect = 0.32
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = +3
Query: 435 RNLTVKPSTKPSGGIVAASCCHC-----DIIGWCTIKNIKSFLSFSFLHQKKKKK 584
RNLTV K G + ++C H D++ WC I +F SFL Q K K+
Sbjct: 795 RNLTVSECKKLRGVFLGSACGHHGPYIPDVLFWCVILFFTTFFLSSFLKQFKTKR 849
>AB012130-1|BAA25898.1| 1018|Homo sapiens sodium bicarbonate
cotransporter2 protein.
Length = 1018
Score = 34.3 bits (75), Expect = 0.32
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = +3
Query: 435 RNLTVKPSTKPSGGIVAASCCHC-----DIIGWCTIKNIKSFLSFSFLHQKKKKK 584
RNLTV K G + ++C H D++ WC I +F SFL Q K K+
Sbjct: 581 RNLTVSECKKLRGVFLGSACGHHGPYIPDVLFWCVILFFTTFFLSSFLKQFKTKR 635
>BC093771-1|AAH93771.1| 1127|Homo sapiens NCK-associated protein
1-like protein.
Length = 1127
Score = 31.1 bits (67), Expect = 3.0
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 137 EPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 313
+P L K EP L +KF +D+R + + H+ V+ + I + L +YQ +VD
Sbjct: 42 KPPFLLEKSMEPSLKYINKKFPNIDVRNSTQ---HLGPVHREKAEIIRFLTNYYQSFVD 97
>BC093769-1|AAH93769.1| 1127|Homo sapiens NCK-associated protein
1-like protein.
Length = 1127
Score = 31.1 bits (67), Expect = 3.0
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 137 EPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 313
+P L K EP L +KF +D+R + + H+ V+ + I + L +YQ +VD
Sbjct: 42 KPPFLLEKSMEPSLKYINKKFPNIDVRNSTQ---HLGPVHREKAEIIRFLTNYYQSFVD 97
>Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex lateral
element protein protein.
Length = 1530
Score = 30.7 bits (66), Expect = 4.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 248 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILFQYDRSLLVAD 379
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for
IMAGE:8860302) protein.
Length = 792
Score = 30.7 bits (66), Expect = 4.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 248 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILFQYDRSLLVAD 379
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 338 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 381
>BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 30.7 bits (66), Expect = 4.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 248 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILFQYDRSLLVAD 379
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 30.7 bits (66), Expect = 4.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 248 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILFQYDRSLLVAD 379
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein.
Length = 1024
Score = 30.7 bits (66), Expect = 4.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 248 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILFQYDRSLLVAD 379
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 30.7 bits (66), Expect = 4.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 248 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILFQYDRSLLVAD 379
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 30.7 bits (66), Expect = 4.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 248 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILFQYDRSLLVAD 379
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL122010-1|CAI23556.1| 979|Homo sapiens discs, large (Drosophila)
homolog-associated protein 3 protein.
Length = 979
Score = 30.7 bits (66), Expect = 4.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 205 GRHQSDSQGWWSCSTSLRYPTSYFKG 282
GRHQ+ S GWWS +L + + G
Sbjct: 251 GRHQAKSTGWWSSDDNLDSDSGFLAG 276
>AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 30.7 bits (66), Expect = 4.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 248 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILFQYDRSLLVAD 379
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 30.7 bits (66), Expect = 4.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 248 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILFQYDRSLLVAD 379
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein
protein.
Length = 520
Score = 30.7 bits (66), Expect = 4.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 248 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILFQYDRSLLVAD 379
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 61 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 104
>Y08201-1|CAA69383.1| 331|Homo sapiens rab geranylgeranyl
transferase protein.
Length = 331
Score = 29.5 bits (63), Expect = 9.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 217 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 309
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>X98001-1|CAA66638.1| 331|Homo sapiens geranylgeranyl transferase
II protein.
Length = 331
Score = 29.5 bits (63), Expect = 9.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 217 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 309
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>U49245-1|AAA91473.1| 331|Homo sapiens geranylgeranyl transferase
type II beta-subunit protein.
Length = 331
Score = 29.5 bits (63), Expect = 9.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 217 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 309
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>M62302-2|AAA58501.1| 372|Homo sapiens growth/differentiation
factor 1 protein.
Length = 372
Score = 29.5 bits (63), Expect = 9.1
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 371 VADPRR-CEPKKFGGPGARARYQKSYR*AFNETIGWYR 481
+A PRR EP GGPG R ++ Y +F E +GW+R
Sbjct: 248 LARPRRDAEPVLGGGPGGACRARRLYV-SFRE-VGWHR 283
>CR456941-1|CAG33222.1| 331|Homo sapiens RABGGTB protein.
Length = 331
Score = 29.5 bits (63), Expect = 9.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 217 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 309
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for
IMAGE:6451327) protein.
Length = 204
Score = 29.5 bits (63), Expect = 9.1
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 317 ASKKEIKD-ILFQYDRSLLVADPRRCEPK 400
ASKK +K+ ++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>BC020790-1|AAH20790.1| 331|Homo sapiens Rab
geranylgeranyltransferase, beta subunit protein.
Length = 331
Score = 29.5 bits (63), Expect = 9.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 217 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 309
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein.
Length = 689
Score = 29.5 bits (63), Expect = 9.1
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 317 ASKKEIKD-ILFQYDRSLLVADPRRCEPK 400
ASKK +K+ ++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein.
Length = 198
Score = 29.5 bits (63), Expect = 9.1
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 317 ASKKEIKD-ILFQYDRSLLVADPRRCEPK 400
ASKK +K+ ++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL357314-5|CAI22393.1| 331|Homo sapiens Rab
geranylgeranyltransferase, beta subunit protein.
Length = 331
Score = 29.5 bits (63), Expect = 9.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 217 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 309
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>AK126054-1|BAC86416.1| 926|Homo sapiens protein ( Homo sapiens
cDNA FLJ44066 fis, clone TESTI4036909, weakly similar
to Regulator of nonsense transcripts 1. ).
Length = 926
Score = 29.5 bits (63), Expect = 9.1
Identities = 18/80 (22%), Positives = 34/80 (42%)
Frame = +2
Query: 104 LRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKA 283
L P + R+ + K P KF ++ + T+K + QV+ + + + A
Sbjct: 385 LLTTSSPTIVSNKRVSKRKFIPPAFTNVSTKFELLSLGATLKLASELIQVHKLNKDQATA 444
Query: 284 LIAFYQKYVDEASKKEIKDI 343
LI Q S +E+K++
Sbjct: 445 LIQIAQMMASHESIEEVKEL 464
>AC003972-2|AAB94786.1| 372|Homo sapiens GDF-1 protein.
Length = 372
Score = 29.5 bits (63), Expect = 9.1
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 371 VADPRR-CEPKKFGGPGARARYQKSYR*AFNETIGWYR 481
+A PRR EP GGPG R ++ Y +F E +GW+R
Sbjct: 248 LARPRRDAEPVLGGGPGGACRARRLYV-SFRE-VGWHR 283
>AB209023-1|BAD92260.1| 320|Homo sapiens Rab
geranylgeranyltransferase, beta subunit variant protein.
Length = 320
Score = 29.5 bits (63), Expect = 9.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 217 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 309
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,709,972
Number of Sequences: 237096
Number of extensions: 2084077
Number of successful extensions: 4924
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 4713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4916
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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