Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0263
         (656 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0001554ED1 Cluster: PREDICTED: similar to type XVIII...    36   0.86 
UniRef50_A2DNP7 Cluster: Putative uncharacterized protein; n=1; ...    34   2.6  

>UniRef50_UPI0001554ED1 Cluster: PREDICTED: similar to type XVIII
           collagen long, partial; n=1; Ornithorhynchus
           anatinus|Rep: PREDICTED: similar to type XVIII collagen
           long, partial - Ornithorhynchus anatinus
          Length = 512

 Score = 35.9 bits (79), Expect = 0.86
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
 Frame = -2

Query: 118 PVRATPSCTEYDSSGSARWRRAAPYCGT-----STGGPAPAAPR 2
           P RATPS  E + +G    + +AP  G+     S GGPAPAAPR
Sbjct: 188 PSRATPSPLEQNGTGMLLTKPSAPPPGSASFPFSPGGPAPAAPR 231


>UniRef50_A2DNP7 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 443

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +1

Query: 139 DSKLQFMRIMFCVFASHRIYIIEY 210
           + KL FM ++ CVFA+H +YI+E+
Sbjct: 225 EQKLTFMLLILCVFAAHPLYILEF 248


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 627,663,352
Number of Sequences: 1657284
Number of extensions: 11637418
Number of successful extensions: 30503
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30494
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)