Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0263
         (656 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.9  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   3.9  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   8.9  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   8.9  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -2

Query: 118 PVRATPSCTEYDSSGSARWRRAAPYCGTSTGGPAPAA 8
           P     + T   SSG      A P   TS+G PA  A
Sbjct: 12  PPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVA 48


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 55  AAPYCGTSTGGPAPAAPR 2
           A+PY GT T   +PA P+
Sbjct: 310 ASPYSGTPTPMMSPAPPQ 327


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -2

Query: 652 PNKGIRTLSTPSCA*CYQVNNKSDIVTPVRVMPS 551
           P+ G    STPS      VN   D  TP    P+
Sbjct: 410 PSPGSDQRSTPSPRVYGNVNENQDCSTPTENSPT 443


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 294 VCEVFKC*IVFKFYFGGILFIPEPQ 220
           V   F C I F+ +   I+ +PE Q
Sbjct: 296 VLSFFLCLIPFRVFILWIILVPEEQ 320


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,705
Number of Sequences: 336
Number of extensions: 2819
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)