Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0263
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.2  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   5.5  
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    25   7.3  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    25   9.6  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    25   9.6  

>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 232 PRTPARSNILLCKFYDSRKHKT 167
           P TP +SNI   K + +R HKT
Sbjct: 435 PNTPTKSNIDTGKAHSARAHKT 456


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 259 LKNYSTLKHFTNTLKFSIHFFRFASGDPFAVSLRVVPI 372
           LK+Y T+++ +++   S+   R A GD F     ++P+
Sbjct: 572 LKDYKTIENESSSSPLSLSSIRLALGDSFKSLDELIPL 609


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 413 TTSLELSRIFHTSLVLSPLSNNRWRCTSRAF*VLLDSSLFVRLFGD 550
           +T  E +  +H +L LSP      R  +R+        +F+R FG+
Sbjct: 413 STISEYAEAYHKALTLSPQEQLEMRINARSACARFGEHVFMRDFGN 458


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 33  LVPQYGAARRQRAEPEESYSVHDGVALTG 119
           ++P YGA +    +P  ++ V DG + +G
Sbjct: 48  IIPVYGAEKTDTLDPINNFRVLDGSSASG 76


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 285 VFKC*IVFKFYFGGILFIPEPQRVAIFYYVNSM 187
           V KC  + KFY   IL I +P +  IFY V S+
Sbjct: 106 VEKCYQMNKFYAYPILAILDPIKKTIFYTVASI 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,389
Number of Sequences: 5004
Number of extensions: 50300
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)